Protein Info for mRNA_4079 in Rhodosporidium toruloides IFO0880

Name: 12447
Annotation: KOG2518 5'-3' exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 769 PF00752: XPG_N" amino acids 45 to 136 (92 residues), 32.7 bits, see alignment E=1.3e-11 PF12247: MKT1_N" amino acids 378 to 469 (92 residues), 67.8 bits, see alignment E=1.3e-22 PF12246: MKT1_C" amino acids 554 to 663 (110 residues), 121 bits, see alignment E=7.9e-39 amino acids 662 to 764 (103 residues), 63.8 bits, see alignment E=2.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (769 amino acids)

>mRNA_4079 KOG2518 5'-3' exonuclease (Rhodosporidium toruloides IFO0880)
MAISLQPTVTIVHQSVPSVSLSRTALLERVPPLFPRSTSLHSRKMPVRGLDVWLAERGLV
KECPLQALAGTRLGIDAHHYLRKLLSLREPLDKHDAFTAAIGGLPLTLATEIEGNMHTLQ
SLGIKPVIVFNGINPLDRERPSPNDERSWRRGQAWEHYEHGRLPQAQTEFGSSSSISPQD
VFRLVLRQFKQRTTEFVVAPYLAWAQLAYLERHERAYVHSIYGANELFMFDGLDRIILDI
DFDRQTISFASKAALLDSMSLTSDQFLDLCVLAGFDGSPTFPAIDPQGFHLRSVVEAIKQ
RGSGVNAVLAHQNFGPVYQSNYADTFARSRAMIKFSLVLVAHEGRVLPLPLVTPPPAPIG
PNSHQHQPPQIYTSADVPVDLGEIFSSHFPEEVYYQVFRGLVAPHVISPLATGQVIEQTP
LCGSTPEYERYIKSLNELPQSPRCVSLALVSNVLNPLWSKKPVSAVHYFQPGAETVIPHA
APHTQAFIESVSKWNVGARHIEDELRRQASSTIDLCLCLGGTSTTSLAQRTIVPKNADRP
LDKKDEIVANTLWRFLELRSFLTSAHQHTPHAAALHLAMKNSKVNDKFQEPLFLAMELLR
ANVLHNGRIGTRPYSGGPNLGGTEADKRSMLLVMRVLSIVPLAFTPGAWNGPLSRELLVF
NSLPFQTDTNTGMGILFKAYGDAFTSMAGGLEMVQRSLVKDEEVLGLLQGAFTNVKSVRA
ELERGFRFWNLIMLAVRSLRQSTAGPAIAPDLADQFEAADVWLKPFVLQ