Protein Info for mRNA_4087 in Rhodosporidium toruloides IFO0880

Name: 12455
Annotation: HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07519: Tannase" amino acids 78 to 547 (470 residues), 329.7 bits, see alignment E=1.7e-102

Best Hits

Predicted SEED Role

"Chlorogenate esterase" in subsystem Phenylpropanoid compound degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (550 amino acids)

>mRNA_4087 HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474 (Rhodosporidium toruloides IFO0880)
MKSTVAALVPLALAGTALGAAVPSGKTSSCHDLWTEAPKHLPSLEVYYANDVAAGTNFTT
PYATPAYPQAVPEVPAFCRFGAYIHTSNSSKVQFEVWLPTADQWSGRSAMVGNGGDAGGV
NFPDMWAPIAKYGFAVASTDTGHNGTSGDGTFALNGPETQIDFGYRAVHLTTVYSKEILK
LYYGKKQKTSYWLGCSSGGKQGLKEVQMFPEDYDGVIAGAAAQWWQHLNAQTYRINALVN
PTTSPNHLNASDYTVIGAEVYKQCDELDGVKDGVIRNPRKCKPDLSPLLCSAAGANQSTC
LTQGKIDTMHAIWANWTATTRDEFLFYGFEPGAEAAGQVFSVNGIPYGPGPDYFRYQVLN
ATSKGNFVANETELERLLAIADETDPGQTNAWNPNIQKFLKKGKLLAYVGLADTLIPSGS
TIGYYERVRSALGQPKNFNDAYRLFTVPGMWHCRGGPGAYNFGGPGQRQLSLGGGGQGSS
FDSQHDMVLAMIDWVEKGKAPETIIASSYVGADKRNGTAFERPLCTYPKEAVYVGGDQNK
ASSFECKYVG