Protein Info for mRNA_4117 in Rhodosporidium toruloides IFO0880

Name: 12485
Annotation: K15728 LPIN phosphatidate phosphatase LPIN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1133 PF04571: Lipin_N" amino acids 5 to 100 (96 residues), 120.1 bits, see alignment E=5.5e-39 PF16876: Lipin_mid" amino acids 537 to 636 (100 residues), 83.1 bits, see alignment E=2.1e-27 PF08235: LNS2" amino acids 706 to 932 (227 residues), 342.6 bits, see alignment E=1.6e-106

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1133 amino acids)

>mRNA_4117 K15728 LPIN phosphatidate phosphatase LPIN (Rhodosporidium toruloides IFO0880)
MQWARKAVNYYSSINPATLTGAIDVIVVERPTESGDVELACSPFHVRFGKLSVLRPVDKK
VRIHVNDERVPFYMKVGETGEAFFVFETEADVPADMQTSPLSGPVSDDGRSDNGEGEIEA
LDLDAPAAEAEPREADEDQPLAPTPSNPSSPNSSRYVSLAGTQANSPTVPFRSFPPTPFL
PANSHSRSASVDHVTAEPLTESPADEVDDPHEAASKKATHVPSPVARAAEKAAGIGAAAF
NKPAQGLHDASLRRQVKEEASGGKTGRRRSARDEYDLKGEPAEVGQPDDRLQAGLNGLSL
DDRREGQKPTDTSEETGDAVIRAARHRNADVRALLGGKDGLGDAVDGTGDRRPSFSTKRF
PTGELKINSDQLLRDAQGHEYGGAPEDTGGLMLDVSGYKLESEKDEEKGKLKGAEQELRD
VNRLELDEKSEKEVMLFTQALLQSTDPSTLRNLFGDDDPTSRASSPVPHLDLDKADDSSE
RRIGPRPRASSPRPVSVSDLQSIHAESDIASSPDDGVYHATPKQFTLRTGGTVHVFELSL
CGTDAFAQVNKTVADRLFAEHQITFNEFLEQDSIPDNPDLVVKYAGRYLTWDNASPVLAS
LAVYRKSLVAHPEHHRHTDSTTDEQGKSHRRGWSLWWGRSRTSTADTISTASAPIGETSP
PTSPPISPPGTPKSLPVSDTNDSVPPLPHHDDDEFPPEDHSKHYAKTLRLTSDQLKTLKL
KKGMNTISFSVRSSYSGIATCSSRVFLWESDFQVVISDIDGTITKSDALGHVFTMIGRDW
THLGVAKLYTDISRNGYKMMYLTSRAIGQADTTREYLKGIKQNGFQLPDGPVIMSPDRLM
TSLHREVIMRKPEVFKMACLRDIQRLFGDRSPFYAGFGNRITDALSYRSVDIPSSRIFTI
DSNGEVKMELLELAGYKSSYIHMTDLVDQMFPPINRTSAPEYTDFNFWRAPLPAFDIEIP
ELAPPSPALSARSDQSTSRISLSRLGNLASSLSRRSSRNALNDASSVTSGGTNRNVRGAT
PTSPLLQATVPEEHGDDEADVGDDESFLGNRSRSSSMPGSFDESDFDRYRAMAGDRSGAK
STTSEAEAYKKKVQGGVQDADEEEEEDEEVPEDMDAEVDDFGDQLDFSSVPYL