Protein Info for mRNA_4153 in Rhodosporidium toruloides IFO0880

Name: 12521
Annotation: K20347 TMED2, EMP24 p24 family protein beta-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 169 to 189 (21 residues), see Phobius details PF01105: EMP24_GP25L" amino acids 23 to 194 (172 residues), 180.9 bits, see alignment E=1.2e-57

Best Hits

Swiss-Prot: 48% identical to EMP24_SCHPO: Endosomal protein P24B (emp24) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 69% identity to scm:SCHCODRAFT_13023)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (199 amino acids)

>mRNA_4153 K20347 TMED2, EMP24 p24 family protein beta-1 (Rhodosporidium toruloides IFO0880)
MHSRLLRASFFVVLALCVARVRAHTIDLDAGAKECFFEDLHTEDKMTVTYQVAGGGHLDV
DFWLTGPGNRVMNEQRKKDTGTYSFTAEQDGRYTYCFSNEMSTVSGKTVSFNVHGIMYVE
DDGHTAPIEREIRQLSAALEAVKDEQEYIVVRERLHRDTAESTNDRVKYWSIIQTVMLFA
VCGWQIFYLKRFFEVKRVV