Protein Info for mRNA_4154 in Rhodosporidium toruloides IFO0880

Name: 12522
Annotation: K17402 MRPS23 small subunit ribosomal protein S23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF13741: MRP-S25" amino acids 1 to 254 (254 residues), 145.9 bits, see alignment E=7.2e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>mRNA_4154 K17402 MRPS23 small subunit ribosomal protein S23 (Rhodosporidium toruloides IFO0880)
MNARKSAKNIPHTIGRQLKSGVFLKNPPASFYPILAHPPPPSLVRTFPQRPEADLPLPAR
KSQQGADNRSMYQLAKQKQERGIKLTAHEEEALRDPLGTGAVRDVTRKAPPTAWGMGKVR
PREIVFPEDKIRRLFFLDHPYEAYRPTTLVENERVTEPEYPQGKEWTELRQRSTFPTPED
CISFISNLIEHHGMPLSKAYPHGVAQFRTLRAEQETANRSARLEAQAHGATFFGEVEKQI
RVQEKVLDEWKDARLIQDAFTALTGTGSSRQNVQAALKAASQAASPVQQAQESKWGDVPT
RPALEGGEPVKAGFTGGVELLRRFAEVGAVPAPATQSG