Protein Info for mRNA_4156 in Rhodosporidium toruloides IFO0880
Name: 12524
Annotation: KOG1242 Protein containing adaptin N-terminal region
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2569 amino acids)
>mRNA_4156 KOG1242 Protein containing adaptin N-terminal region (Rhodosporidium toruloides IFO0880) MAAERDELDWPEYISEAWTALSGTRTKDRTEKLAELRVWATKPSLEPAQVQDLVRLLLST VPRYVDSTSRQAVLAVLSALLARDYASSRDNAAATSNGKTASLTNGLIKWLEGEAAKVDK TGAGSTRFALLAWANTIYSSVPADHPLEDAPFASLAITLSTLLNAVLDEANGAKETIRKS ALVSTRRAVRTRHESIPRLVKTLASAKSDPSYRHAALIGLAMDVALRLKDPKGQQGVGKG YVDELEPIVNDLYLNSVVTSKTVPPSHVLSAFSDFFSATVTLDDAMSTFIPALEKALNRA AEPALAILRSFFATLPPSVSSDPTLRQKLAPAVLTSAKSSSAPTRAAAIRLFSTLYSSGS EEDLLPVAEQVYTPVRTGKTTSVDHRVALYTMLASLPPSPKLSAEIVTTALTALPKETNE NTVSAVSQVLSAHLPAVLLADTAVPAPQIAALVKGMADTKPAIRRLVQSTVGNVFWALKG LGKEATEAEKAFATGLLPGFEASLKIVTTNMLNSPSGPLEGYVAVAVLKSRASKWGVKKT DDLVNSNAAMQTLGQTGAKPNFFLYDKVYRKASSIEDGIWLARALEAFFDADEDKLAKDE TIRANFAAAHLHLVTEGASHDIRAEAVGFVHRACARSPKLVHLALRDGMRAWLVQSEKAK AVAKPTAEDADAPLDRAPRLRAVLSALAAFDNEVDQQTREDLLVQLVVLAHHPRLSKSEA SLWVDLLLIAKVSPDKVIAERLSELIDLVLADASLTPANQAFADAAYRAVTTCALILPEK AVPALFAQFQDDLLPSHLEFIGATEFGVWGTPEGQTFVDVLADAKKKTSATPVGKANSKE HQIALWEAELRESLSRKKPVAAQLSKQDRATLDKQLALESEIRAQVGTALGRLRRGFRFA LCLISSHAELVREYLAKMIEQTLAVIMLQPATLVAEEAFETYLALANVCSERLGVFKTAI GVAVVRSVDAQVVPENYRAEPLPDLISRVLFQLRFLSEQSPFDAGTYTYAAPLLSKILRT GGVGIDKSQAEAALEQLSLALDVISFHVRQCSDTAFPRLALVGDLLAAVTGYPSLSRTAA TALADLGEAMQDNASSDEIAAILDGALAEEAFVRLAALQALQPLDLTDLDFPVKLWILAH DVDERNRELAITVWQENGLSVPEKTFLPPLIALLSHSAPSVREAVAAAIAEGVTLHSDHV ADALLQLIAEYEDKAKELVPEYDRFGMLVEESLSREDPWRTRKAIATTLRLMADLFSPAD VETFFDLLIAGKALGDRSQSVRTEMLEAAQTVIDIHGKETLQHLIETFEEYLARPSTGDE TQDLVTEALVILFGRLARHLDPTDPRIKTVIGRLIEALKTPSEVVQAAVCDCLPPLVKVR KDDIPDLVNQLLNDLFNAPKYAERRGAAYGLAGVIQGRGLSAVHEFGIMGRLQDNAEDKK SLQARQGAVFGYEVFATVLGRLFEPYIPEILPTLLASFGDSAPDVREATSDAAKAIMSRL SGHAVKLILPTLLEGLDEKQWRAKKGAIELMGAMAFLAPRQLSASLPTILPRLTEVLTDT HKQVRESANTSLKRFGEVVTNPEIKEMTSILLDALVDPARKTPKALDTLLTTTFAHFIDA SSLALLVPILDRGLRERSADVKRKSAAIVGNMATLTEPRDLIPYLNQLVPLLRDVLVDPV PEARSTAAKSLGGLVERLGENNFPDLIDSLMSILKSPSAQVDQQGAAQGVAEILAGLGTD RLEEMLPVILQNTSSPRTYVREGHISLLVFLPVTFGDRFSPYLGKIIQPVLSGLADDSDF VRDASMRAGRMIVANHSTKAIDLLLPELEQGLFDESWRIRQSSVQLVGDLLFRISGISGK ISEEDEGDDEAEETAAPGLDAAKKALIEGLGKERRDRVLAAIYIVRQDAVGVVRQAAIGV WKALVSNTPRTVREILPILMQTIVRILASPALEQRETAARCLADSCRRLGESVLGEVISI LQKAMSSQDRRQREGVCLAFTELMANTSKSSLEAHEETVIAAVRSALVDSDASVRSAASQ AFDIAQQVIGPRSIDEIIPTLLDALQTPGATADAALEALREVMQVRAEKIFPVLIPRLIA QPITAFNARALSALVRVAGSALGRRVTHIVDALQSALEKEQDEETKESLDAALNAVLAAV EDHDSGLGSLQMHMLGLCKHESPTKRITGCNLFARFCRATEADFSDYVVDYIRQLVSLFD DRTGDVVTAAWSALDALVKKLDKEDMEPLVVPLRRTIEGVGLPGHPVEGFSRPNGLKPIL PILLQGLLAGTAEQREQAAYGLGDLVERTTPEAFKAYCIQTVGPLIRVIGDRLPPPVKSA ILSTLTILLQRTPLFVKPFFPQLQRTFVKSLVDTSSLSVRNRAVAALGALMQHQPRVDPL VTELVNLVASEEGDVRDSVVNGLAATVASGGKNMSESSISSVVDIISEAFAESPKESYAT AVARLVASVALHSPSSLDFIVTSFVLGTSTDLPPTQLSAIALRELIDTAPSVLYELDKDA TVDRVVRMASGSATGGTANPAIARPARETKDLMKEREPWRDDEDVLSKL