Protein Info for mRNA_4177 in Rhodosporidium toruloides IFO0880

Name: 12545
Annotation: K15356 VRG4, GONST1 GDP-mannose transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 transmembrane" amino acids 53 to 76 (24 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 143 to 143 (1 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details amino acids 340 to 359 (20 residues), see Phobius details PF08449: UAA" amino acids 68 to 358 (291 residues), 37.5 bits, see alignment E=1.7e-13 TIGR00803: UDP-galactose transporter" amino acids 143 to 356 (214 residues), 122.7 bits, see alignment E=9.2e-40 PF00892: EamA" amino acids 214 to 352 (139 residues), 28.3 bits, see alignment E=1.8e-10

Best Hits

Swiss-Prot: 59% identical to GMT_PHANO: GDP-mannose transporter (VRG4) from Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)

KEGG orthology group: None (inferred from 59% identity to pno:SNOG_09225)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (380 amino acids)

>mRNA_4177 K15356 VRG4, GONST1 GDP-mannose transporter (Rhodosporidium toruloides IFO0880)
MAANDGKGDYKVVIDQEQEPALASSRQPSFAAQGGLAGPGRLSQQSQYDRLLNHPALPVM
CYCASSILMTVVNKFVVSGKGFNMNFLLLTIQSTVCVGCVVTAKRLGVITFRDWDREDAR
KWFPISFLLVSVIYTGSKSLQYLSVPVYTIFKNLTIILIAYGEVLWFGGSVTPLTLVSFF
LMVLSSMMAASPDILNWLNGVQAAPKPGGQSSAGYAWMMVNCFVSAGYVLAMRKRIKVTN
FKDWDSMFYNNLLSIPVLVFFSLIFENWSGANLAKNFPEETRSSLLSLMAFSGAAAVFIS
YCTAWTVRTTSSTTFSMVGALNKLPVAASGILFFGDPATFANVSSILVGFFAGLVYSAAK
TAQSSAAKPNVPVELGKTRG