Protein Info for mRNA_4188 in Rhodosporidium toruloides IFO0880

Name: 12556
Annotation: KOG4372 Predicted alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 555 transmembrane" amino acids 342 to 367 (26 residues), see Phobius details PF05057: DUF676" amino acids 6 to 250 (245 residues), 110 bits, see alignment E=6.2e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (555 amino acids)

>mRNA_4188 KOG4372 Predicted alpha/beta hydrolase (Rhodosporidium toruloides IFO0880)
MLAPRPVHLVTVLHGLWGSPTHIAYVVDSLTRHAARPTAPRSRARDAPEKKVEVVVLAPR
TNAESFAHTYDGIDVCADRVVEEIDAEVRRIEDDGGKVERFSIVGYSLGGLVARYVLGLL
DSRTPSFFSTVRPVNFTTFASPAIGIPQYKSFWSRTFRFLGSRLLSRTGNQLYERDRFLP
ARFNSGKDDGVRDRKGLSKYLPVVKGREEAEPLLKVLADPRYNFYKALAKFEKIDVFANT
VNDRTVPFPTGGIEAHDPFGLARAKAKKLADARGDDPDTQPDIREGGLEITLEPDAPIIS
SYRTIPVPSASASANTAPSKRRFRLRLPFLLRPTSYPFSRPVSLAIIAFLPLALPLSVLY
LISRFALQGRESRRRIRDARKKLGEGREGMLRRVGVGMAEVVEQVGVDNPEYVEGLQQEG
EEEGRGEGPQRGFGRVGGEETPVLARPVSPPSLASTPARSPSPSTTPSPAGSDTPLVPPT
PAPADAAHYSTDPILSSSQLFQLNNLNALPGLHKHFVYLPHARNAHGAIVRRDPNLAMHR
EGRKVVDWWAWQFLV