Protein Info for mRNA_4192 in Rhodosporidium toruloides IFO0880

Name: 12560
Annotation: K04797 pfdA, PFDN5 prefoldin alpha subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 TIGR00293: prefoldin, alpha subunit" amino acids 15 to 139 (125 residues), 96.3 bits, see alignment E=7.5e-32 PF02996: Prefoldin" amino acids 25 to 141 (117 residues), 95.2 bits, see alignment E=1.3e-31

Best Hits

Swiss-Prot: 36% identical to PFD5_BOVIN: Prefoldin subunit 5 (PFDN5) from Bos taurus

KEGG orthology group: K04797, prefoldin alpha subunit (inferred from 51% identity to uma:UM01101.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>mRNA_4192 K04797 pfdA, PFDN5 prefoldin alpha subunit (Rhodosporidium toruloides IFO0880)
MSAPPGTVSLQDLTLEQIGQVRSQLEQELKHLTAAFGDLKAAQSKFMACMESLDSIKPDN
KDKKVLIPLTGSLYVPGRIADPENVLVDIGTGYFVEKETKQAKALYNAKVLALKSNLATL
QQQIEKKQDNFTACGEMMRVKMAQQQQAQAAGGAKDD