Protein Info for mRNA_4203 in Rhodosporidium toruloides IFO0880

Name: 12571
Annotation: K19842 ROM1_2 RHO1 GDP-GTP exchange protein 1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1059 PF00610: DEP" amino acids 82 to 151 (70 residues), 50.4 bits, see alignment 3.8e-17 PF00621: RhoGEF" amino acids 328 to 508 (181 residues), 122.6 bits, see alignment E=4.6e-39 PF15405: PH_5" amino acids 546 to 681 (136 residues), 150.4 bits, see alignment E=6.9e-48 PF00780: CNH" amino acids 711 to 993 (283 residues), 262.7 bits, see alignment E=9.5e-82

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1059 amino acids)

>mRNA_4203 K19842 ROM1_2 RHO1 GDP-GTP exchange protein 1/2 (Rhodosporidium toruloides IFO0880)
MSFSAGDRPDLFRGYDSPASAFSASQPSLPIVRPPSYHSTSGHGQHSTNAGGGGAGALVP
RRSPVVYPALLSRVAAAFKERLPVAERIKDGLVYQDAFDGREAVDIISYIIRTSDRNLAL
LLGRALDAQKFFHDVTYDHRLRDSPNEIYQFRERLASPFLSSEDLVPENQQQVAQHPHKP
NSAAAQAQAVGQALHARSTSQSPPSYPSSGTPFPSAPPARAASVATDDDSPLPIGVFTLL
TDCYSPTCTRDRLCYSIACPRRLEQQARLNLKREGLSAGLENVAGLKRSDSVESLGNLRE
PGSLWIHSVPQEVIDSTSDQEKKRQEAINEVFYTERDFVRDLEYLRDFWIKPLRSSNIIP
EARREDFVTQVFWNVLEIYAVNVRLADLLNKRQKQAHVVDHIGDIFLDMVPHFAPFVKYG
AHQLYGKYEFEKEKGSNPAFAKFVDETERLPESRKLELNGYLTKPTTRLARYPLLLEACL
KHTADDNPDKVAIPKVIKMVREFLAKVNIETGKSENRFNLAQLDQQLVFKNGEAVDLRLR
DEERELIFKGPLKKRGGTQSESAELQVFLFDHAILMVKQKSKNEQYKVYRKPIPLELLVV
AAVDDAATARGGVVRPRSLMARSGAKTLPATANQPPPGADKNKQGFPLTFIHLGRRGYQI
TLWASTWTARKKWLDKIEERQNELRERSLVFETIPLTAGYFVGTNRLTCAAPFDNGNRMV
YGTDNGVYLADLREKSKVPVKVISVPNVTQLDVLEEQGILIVLADKAVQTFFVDHLDPGD
AIGAAKRARKISANATFFKAGQCLGRTLVCVVKSGNVSSTIKTLEPVDQVRGKKQPTIRK
FLQGSNESLRVFKEFYIPTESSSVHFLKSKLCVGCTKGFEIVDLETLDTQGLLDPADSSL
DFVQKRENAKPIAIYRIDGEFLLCYDEFAFYVNKNGWRAKQNWIIQWEGFPSGFALHYPY
VLAFEPTFIEVRHVESGALMQIIPGNNIRCLFADSPPSASAASYYRQQQQQPNNIAARYG
SPYGHSPPVRLAPPTARSGIIVADGDRAFSLVFNAPTDL