Protein Info for mRNA_4208 in Rhodosporidium toruloides IFO0880
Name: 12576
Annotation: K17919 SNX4 sorting nexin-4
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 53% identical to SNX4_CRYNJ: Sorting nexin-4 (SNX4) from Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
KEGG orthology group: None (inferred from 56% identity to cci:CC1G_01822)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (489 amino acids)
>mRNA_4208 K17919 SNX4 sorting nexin-4 (Rhodosporidium toruloides IFO0880) MDGSFHDEDFSSSVAWETGAPTSSTATSSANATSSPQAHTGTGGYSAYSRDASPGLAGPS TGTEGRAGFDGTGGGGAAGARANGLAVTDVQVRDGKVELEGTSDTFVSYLVTAQTELPSY SSKTPSARRRFHDFVFLRDGLVKDFPACVVPPLPEKHRMEYVIGDRFSAEFIERRRQDLE RFLQRLARHPKLSRTEIFQNFLESTEWNVYKHKHHARASSIDDGHSGVLDTLSDTLLNAF TKLKKPDERFVIIRQHLDSFEEGLTSLERLAGRSKTRMSDLSGDYEDLAVSVQGLGYLES GITEPLMRFERALVDFGANVKDHSASASEGFLEHVHSLLAYSHSFKSVLKLRDQKQLDFE ELSSYLSNVVTERDRLAGGYGYGMGIGSYLKERMESLRGGETDMSRAARLQRLDAKIKEL QEAVLHAQETSTAFNEQVLAEHEIFRGTKRHEMKKLLGAFADGQIKMHKASMQAWDRTIP PLQRIYVEP