Protein Info for mRNA_4210 in Rhodosporidium toruloides IFO0880

Name: 12578
Annotation: K19985 EXOC6, SEC15 exocyst complex component 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 792 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF04091: Sec15" amino acids 453 to 763 (311 residues), 317.4 bits, see alignment E=6.3e-99

Best Hits

KEGG orthology group: None (inferred from 45% identity to cne:CNA02420)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (792 amino acids)

>mRNA_4210 K19985 EXOC6, SEC15 exocyst complex component 6 (Rhodosporidium toruloides IFO0880)
MSQPRTRRVKFSQQEIQSQLQQLFLFSSLSSSATGDIEALSPILVNIHRSRQQDAYLRAL
KAFVAEKEKEIEAVCGRNYQDFVGSVSALLRVRQGTVSLKHRVVELNDDVQKSGAGLADK
KKALLDARRVGQNIDETIDTLQACLRVLDMASKVQNLIQNAKYFSALRQLEDLQATHLKP
VLHYPFATLMLSSVPDLRNSIRDAVTRSLKAWMYEARETSRSVGKGALDAMEQRGRRWAA
RKRKDASLGLAKINGPIELGLSERHEYNVLDNDAVKIDFKPLYTCIHIYDTLDAREELQL
SYQADRRAQAGLLLSSTSSLNPFSLPALSTLLEEIVGFFLIESHVLRTTNSFRSEQDVED
LWNGMCERVVKIVDEGLAGCEEAEVFLGTKFKVLTFVQTLEGYGYSVSHLNSLLLTLFER
YSQLLQRTFSADFEKIVVDDDHQPMVINDEEEFGKVVSVTWLPSSGEWSAEQLKSSGFPL
ALPFSQTYPLCCVDIRSFTEQYYQFAEGFAEHHRDIDDVLRKALDNLLIKQVSENIQRRL
NMISNLSQLAQIVVNVLFFQTACSDLETLLVTLRATQRGGTIHLDSLASFQQTLTQTQDR
MVAQISQKVDTFFEEAQYPWTATQPPPPHTANDASGYLQDLIDYVSTVMMSVLIQLPEFA
KDYVYRGALARCATVLQSYLTDKEPRQISDAGLLHLARDVRWLVNHVKTLGNDRLADVFT
ELNQLVTLLTATPNITDYLDPQARSTRFHRVQPRALQTVLIKLLTFYNSPQGSGVGHRRR
QQVEDTLRALAR