Protein Info for mRNA_4232 in Rhodosporidium toruloides IFO0880

Name: 12600
Annotation: K14832 MAK21, NOC1, CEBPZ ribosome biogenesis protein MAK21

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1161 transmembrane" amino acids 669 to 686 (18 residues), see Phobius details amino acids 748 to 772 (25 residues), see Phobius details PF03914: CBF" amino acids 675 to 841 (167 residues), 157.6 bits, see alignment E=1.6e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1161 amino acids)

>mRNA_4232 K14832 MAK21, NOC1, CEBPZ ribosome biogenesis protein MAK21 (Rhodosporidium toruloides IFO0880)
MAPPNPYIKALAPSVGGSKSAASPKRKNGDKKDKRGGGSTEGKGKGRAVDSVLREEILAL
GGDEADLEMLEDVESGSEVEGDEEGEAGLLKDLKSFVKGLDFKAAGAAAPASDSEDEAAQ
DDEEDEESDEEDERETAEETIEEPVVEEKKQEENVEPAPAKKESKVEREARRRAEREAAK
AEEALKKEEDKLAKEEKRAAKLHGGKSPWIVDPTPQWYAVPIVAPSASAPRPKPELVTIL
LERGRALLQKENDLYSSSLDPKAAKSSAPPPPTGLSKADQVFIQQILSSGTSSDRISALL
LLVSSSPLHTTTYLDQLAALCRKKSRDESLRAMRGVVDWWSGEGGGSPTRKLRYFADQPA
LATVAAAYEALEKKGKYAVTEYGGLTKEDVERCLVLFTFEDWFKRWFFQILQALEQMSVD
PLPHPRTQAVMHLSSLLRDKPEQESNILRLLVNKLGDTNRGIASKTSHHLLQVLQTHPGM
TPILVREVAALVLRPRTSAIAAGTPAASSSHMRFDDDEDKAKQKKAAAAAAVKDHARDNA
RYYGVVTLNQVMLKKDQAEVAGKMVDVYFEVFSDVLGRLPDKDDEREGSADEGDKPAKGK
KRSRGGDVKGKKGGKKGGDENGREDAVDDVDSKLVAAVLTGINRAFPFAKIDDDLLKKRL
DTLFRITHTSTFNVSIQALLLIFRVASAKKDILERFYRALYASMHDPRLANSSKQALYLN
LLFRATKQDQDVNRVAAFVKRLIQILCGMDTTFVLGGLFIVGELMATVAGLRTLITIPEK
TKLAAVSEAQAQLPEAERDSHALDSYDGRKREPKFAHAENSCLWELTPLLTHWHPTVVQY
ASAVLSGEPISATSDLEQYSLAAFLDRLVYREAKKSASSKGSSMMQPGLAGQDSTNRVVL
VKGAHKASKAEVPVNSEQFRKRNVHDVPADQVFFHKFFSSKAALDGDKAAAATKRKSRKS
RDSDDEEAEGSDAESIADAGGDIDGAGFDEDEMMAAMGDNAEDDEAETDEEMEEEIWKAM
RKSMPKAKGDSDLDDLLDEEASGVDMDDDDDLAQYDYTDSEDEGAEGEAGAADDEEGEWK
SAFPDEDEGDDGSDGFVEADDDLLGSDEDIMLGGGSDEDEEDEEEKARSKKSSKKRKVKH
LPTFASAEDYAHLLGDSDDDA