Protein Info for mRNA_4240 in Rhodosporidium toruloides IFO0880

Name: 12608
Annotation: KOG1700 Regulatory protein MLP and related LIM proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 731 PF00412: LIM" amino acids 160 to 212 (53 residues), 25 bits, see alignment 8.8e-10 amino acids 533 to 586 (54 residues), 26.8 bits, see alignment 2.4e-10 amino acids 664 to 716 (53 residues), 28.5 bits, see alignment 7.3e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (731 amino acids)

>mRNA_4240 KOG1700 Regulatory protein MLP and related LIM proteins (Rhodosporidium toruloides IFO0880)
MGFCRSCGEITTGERCKCGGTSKETVTKALFGTSTSDRWSQRYVSRSPPKSPSPAPPESK
TAYTATTPLGTPSRTLVAPARPPSPTKLAQSFLQQDDGELSSVFGSVLSPKDNWQCAACT
SKFRQEEVIYPHPDVKSDASLAEVFFCRQCFAERFRKGNCKRCKYAVLSDAPFVKYDGNL
WHEACYTCSYCEDPSTSPVIDFAGLPSCEACFDSEAYKTRGIPPSPHLSQSEWGKKPVSV
LPPPSKWGRPSLPSASLGAAKKSNVWTSKAAPASSSSYKSTVTVNEEKPKAWRVRAERDK
SPIAPSLDELGTRLRQAGLVDTPAAAGQTSPLKPGATTTGASSNPSSMASTKSSSFARPA
SPVKTSSRPASGSNSVFASNLLSPTKPTGSPARPALAPVQPTANPPRPLPSPVQPPSPTK
LPSSAPQPTLAPADPDTCPICRLDLGYGEFVELPKTGQVMHRDCFRCGGCEERLGTGKHV
EAEGRWWHQQCAPAPKRYRTIITSLAEPDASSDDAPAPEPPLTAELDADDPSCSGCGRPL
GYGQSVTIPRSGKSFHKDCFCCAGCSGALGEQRGERGFVEVAGLPYHQKCTPPPASPSPA
ILASPFFASDALTSSRSTRLPTLPSFPPKHLPPPSLSSSPAPREPSIFSRLRPPPSNLGG
HLLCAGCSTRATEKETVLGPRGRRYHAICLRCERCGRGLDSECRVGEGGELRCEGCRVRV
SLLSDGYIKVC