Protein Info for mRNA_4247 in Rhodosporidium toruloides IFO0880

Name: 12615
Annotation: KOG3188 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 141 to 164 (24 residues), see Phobius details amino acids 202 to 219 (18 residues), see Phobius details PF01956: EMC3_TMCO1" amino acids 16 to 222 (207 residues), 120.6 bits, see alignment E=3.1e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>mRNA_4247 KOG3188 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MQLFTAPVQLGADSFALDPAIRDRVLLPLTLIVILSGVLRHVLTLLVATPPKPQPLLAVR
EQRAITRGQLLRFNSSHLPPSSFLALRSSLSQAYVNGSFLKAPPPKPSADGVPPNPFEDP
AQMEQMMEGLQDMMKKQAVGFVPQMATMYLVNRFFTGALIARIPFPLPLKFKDLLQRGVQ
LLPSPSSAAPFVADASWCSTSSWYFLCMFGIGPVYQLLLGNNSSAADPSALAPPPPTMPG
APAQDMTKIFRAERENLDIVEYEWVCEGVEERLLERFGRA