Protein Info for mRNA_4299 in Rhodosporidium toruloides IFO0880

Name: 12667
Annotation: K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 transmembrane" amino acids 823 to 846 (24 residues), see Phobius details PF09770: PAT1" amino acids 24 to 590 (567 residues), 139.5 bits, see alignment E=7.3e-45 amino acids 652 to 1015 (364 residues), 212 bits, see alignment E=9e-67

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1023 amino acids)

>mRNA_4299 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 (Rhodosporidium toruloides IFO0880)
MSYDGGLAEDLAVYSFNDLGNQESDLAHLLDDDANALNDETFGALEGGDDEAFGADDAFG
APVGRDFDFAGSTARFLGHDQAPSSAAKPLQQPSTAWTDPLLSSSKPLSSSPWTSLNDDP
LLSSAGKPAYTQPPPAVPQPSRQVKTLEEVEAEMRAAALARQQQQQQPAQASARPMTLEE
VEAEMLRRRGTAAAAASPAVPPAQPQTQQLPPGLAPQQQTPLTSAPQLPFNPATFNPATF
IPPAHLLPPNFTSLPPQIQQQIIAQHRAAAAAAVAAGTFRPPLPQQPPQPAQSQSPAFGR
PPQGPGTPGPAFPPLGASATSPVPAAAGGPNLMATLFPPLPSASGAQGPVSVEQGLQMLS
LSQHTQHPSLTGAQLQALLHQAQSQAQGGGEGGEEEEKKKAADELVRMVEKRIMEHEEAE
GRRKRKAAKIASMAKHNNLMSNSDKDFITRIQVSQLVTDDPYADDFYFHIMAAIKASRQQ
ALAASVGGPLPGPGLVPPQGPNTNSNANRRPTRRENAMNRMAQNVQRLVDSAKKRNATGG
GSGGAGHTLSLEGALGKIATRTRSAPRPLLQVKPSSTSVHKERAVSEEQGAEGARNGTGS
PDAEKQQGQGGKKKVGAGVSTGQSLLAGAGLITTTSSASDAASAPNPITGPLSHRDALAI
IEKIYDCVLDLEQLRRIQPALFATAEGVRAQYEQMTVEGEVREQIREKWDEAKSAVQEAE
DKYKELVDRLWDNLHVMEPLDACTPHPFISILSPLKGKRILPRAIRHLSPEQTLTLLTLL
VATFDTLDVVVEAPVLDQLDTTASGRQRRVAVEAKTEALLNSIVAPIMAVVGQAQLRMVV
GMLGLLMDRNDIIKVVRSKPGLAFLTILLSRAESLKQATPAPEQADLQQWHRTFTHLFGV
LSSGSNLMALFPSTRLAAALPFGVAQYQSLEALRPEADQDDEPVWRFLASVAVCADPDQQ
QVLVTGVRDKVIENVRSARQLEKVKAAQAPAGAPEKAALKIRNVNLLLHALSLDASMIET
DDD