Protein Info for mRNA_4302 in Rhodosporidium toruloides IFO0880

Name: 12670
Annotation: K07819 B3GALT1 beta-1,3-galactosyltransferase 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1090 transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 122 to 146 (25 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details PF12326: EOS1" amino acids 94 to 247 (154 residues), 145 bits, see alignment E=4.7e-46 PF01762: Galactosyl_T" amino acids 308 to 496 (189 residues), 79 bits, see alignment E=9.1e-26 PF04488: Gly_transf_sug" amino acids 708 to 754 (47 residues), 31.8 bits, see alignment (E = 3.6e-11) PF04572: Gb3_synth" amino acids 798 to 899 (102 residues), 23.2 bits, see alignment E=1.4e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1090 amino acids)

>mRNA_4302 K07819 B3GALT1 beta-1,3-galactosyltransferase 1 (Rhodosporidium toruloides IFO0880)
MARLRLGSAASSEPSQASTPLPTSRTQTSPPRKRYRIWTPLLVFLNFLAMVPGLIGFLYS
AARFYSTPHLVWASSTWEEGGHAVGVTDARSTRLDWFVSGMWALATAYFTLSLARGLLRR
WLVYYTFGPTIVRVISLQAICWPLTLTTHRVLSFDQPVAGWVVCATTAAFCNVVQTWVTS
NIVERKDRRGQQGWRIFSAVVTMVLGPGVRTDKYRKGERVLSWRRVLWGTVLPFAVLGWL
TMNALLWQQFVARYKGGGGVHLGKPRLSANVSPPARGPSLATGLNPDADIRVMILVTSSW
TNRSLTNRHAFRETSVRLLPRQTSSISVAYRFLLGVASSPQTAARAGPGIEAEADEFADM
LVVPAHDSYEHLSEKIYEGWKWASGLDVDYVLKTDDDILLRMDVVGKELVQLGRRKEYWR
GFAYWDIPAIKDSSNKNADFSYELSSFPPYTAGALHILSKDLVDLIAPPSSSRLFVKNED
QNLGLWLFPTGIRPIHDYRIQQAQVCENDMIAKHFGGQYKEPSGFGPREMYANIVAGRKQ
CEGLLQDWCGVCYPSCRKRRNHWRDWGYACDDMKGATLWNRPSVSATAALDSPVKLAPEP
FVIGSADDPWILSGLLSQHSSPFSSTDDWYLLHMLCWTTGVETFQERHYQALETIWAHEP
RAILFMCSTNLPTNFFDDYTRQGYAIHVIRVSKEEMLDRGWYLGPHSKRWLEDWERWEKG
PSFFSHLTDYLRYLFLFKYGGTYLDMDAPWIRSPPDSEVEFIGADYSTVASDLDWTLDED
GMYLAPGVMRFRRGWAVFRDIMEKAFSSTYSVDCFNCVGPRAITTAVRSKRHQLEMHGFT
IVPPHVLYPRNWVSAHELVRALAPGEGKAELARIARESWSIHLFGKMTNHLRIQAGSIVG
EAFDAFSLRIPRPVGLLSSADTEKAKPPSSAQGIQLRFPSSYTYRARTTLEQLETPNLSL
VGSADGHFDGLDLISLRGVLASSSTVARAEIRFTTSKGGRVAYSARGLSARTADGQAELA
GGNEVKVVVEKARLRDINAVLRSIIYVPPRRAVDGEVEDLVDELRIEVEWEGEKVEGRIA
VEVPAPPRTG