Protein Info for mRNA_4315 in Rhodosporidium toruloides IFO0880

Name: 12683
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 537 transmembrane" amino acids 37 to 62 (26 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 165 to 187 (23 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 403 to 428 (26 residues), see Phobius details amino acids 448 to 468 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (537 amino acids)

>mRNA_4315 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSASQFLPHTLDGSTVRELLAGVHSFFYPPPTAGFTVRVFILIAIIVATIVSALLFIALH
VYHTRRSGKKVWFGRRIERPSGRLLVLHSRTTWTLSLVIWGGYSVAYSVIYWLVYAKEYS
QRPLIVMRSFQGIPLYLGGWCVSWSGLQAFMLATESANEVVLPVPVANTLFLAGGIVNVS
IVIALATADTVYSLRLYDRYLVLVNALQSLEARLNGRTPTIIDLFPLQAPTQAMLDAGAA
VRPLSTALFAFGTCMPIMCLLVNLGRLALVRKLRVQIRDSVNLIPLSTDDGFLKSAGPVP
PAQAHESASPARQTARDSSLSGPSPSGASDGPLSIDLKRPSSSSSTDKSPIPSPRSAPRT
LSFGEVKRIANRDLEKSAGQIVSPASLQARKVVELKKAERDLILVTHFLAIICAFLAGYL
LWITIIFSGVTPPSSWIKIEFASTFGNWFFFTIALFASIYLNVTTFALDSSHTKRAPPSE
GNSGNHPNFTSLLRQIMPGSQSSELPHTATLNHGDPAHTPSDEEVGIVKEAEEGKPD