Protein Info for mRNA_4321 in Rhodosporidium toruloides IFO0880

Name: 12689
Annotation: K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 770 PF00628: PHD" amino acids 322 to 369 (48 residues), 41.7 bits, see alignment 4.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (770 amino acids)

>mRNA_4321 K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1 (Rhodosporidium toruloides IFO0880)
MNFSNLLNPDGLPADPSTSAAAASTSTAAPQSSPSRMSFDFLNASTSASDSPAFAMGDGY
AGQAAASPAAFLLRPAEPPAQADPTLGAVNPAMLGLRTAFGIGIVPPAARGASPVSVASV
VPDSDDEGRQGGQAAVKGKGKAAMEDDAEVDIMASGDEAGTVAALKAQARSSPAPKPRSR
PGSSKPKPRPAHLTSSAPSPAPSPAPSSNLANEVHPDSQSVSTIHEPPVPLLPPISPSEY
HHPRLSPSIPHRVLPDPFELYVPPRRKGPGGTIVDGSSEEEDEETRRRERQRRAQLAAQR
RGRRDKRGKEEDEGEEEDDRLYCVCKELYDPERLMIACDKCEEWYHVDCVGISEDSVELV
DLFICPKCSATSLDRTTWKPCCARPTCRHPAVPLSKYCSDYCGIYVVSSRLDLLQLDTGI
APEAFWDKVSGARRKEAEVVEVKPDAMEASNDEEARRAASFARQDASDAQVRAQLVDKLA
EAASRRSKLEETIELVDKRLRYLTIAVKRWEALCQATADEMASAGIDLSAATPMSTQGGK
NNRKDRRRASGKKKGPVAATSLPDAQCGLDVRLVYDDAAWRDFLASPFGTELLEAQAKGE
AEKVLEMALGDLEGVCLETRKRCERHGGWQKVREADFAVEKAVLNRRLERLNLLSTSLSN
QLATHDSIVSFRLANRSRTCPPSQLIPIEDFMIEREEEQEEERARRRPRQRSPSLGAGTN
GVRAGGRANGSKSSRESADGGGGQGGEVEIPPELLPFLSRAEIAAYRRGR