Protein Info for mRNA_4322 in Rhodosporidium toruloides IFO0880

Name: 12690
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 210 to 233 (24 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 323 to 341 (19 residues), see Phobius details amino acids 348 to 367 (20 residues), see Phobius details amino acids 378 to 401 (24 residues), see Phobius details amino acids 413 to 435 (23 residues), see Phobius details amino acids 484 to 502 (19 residues), see Phobius details PF07690: MFS_1" amino acids 2 to 427 (426 residues), 125 bits, see alignment E=5.2e-40 PF06609: TRI12" amino acids 16 to 251 (236 residues), 24 bits, see alignment E=1.9e-09 PF00083: Sugar_tr" amino acids 31 to 169 (139 residues), 39.1 bits, see alignment E=6.8e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (518 amino acids)

>mRNA_4322 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MLLSILLVALDQTILAPALPVIASKFQALDQIAWIASAYFLTQTAFLLLYGQILTLFDRK
WTFLFAILIFELGSLVCAVAKNVDVLIFGRAFAGCGAAGIFVSCLSIIAEVTRLEDRPKL
FGLFGAVFALSSVIGPLMGGAFTDHISWRWCFFINLPIGALTIAAIMFILGPQPPPPMTE
AVASYTERKFKRWTFGLWTPPRTSLAFRLFALDYIGTVLMIATIACLVLALQWGGVKYAW
HDGPVVATLVVFAVLVPTIVLFEWKFAGPSRILPLGYFVDRSQAGACMCAFFTMFVLLVS
TYYLPTFYQATRFHSATKSGIDILPFMLGVTIAAGLCGALISTFGYYWPFLVFGPIFSCI
GSGLLYTVDENTSSAKLIGFQIILAIGVGAVLQNTIIAVQADCDDETEVPQKTALVTFAQ
LVGGTIGIAIASSIFGTKLGSSLHKFAPEAPFQLVRNSVEAIPTLPKEMQPGVIHAYTTA
LKDVFIIGAAAGGLTSLCAIPIRNLSVKGKNMAGGGAA