Protein Info for mRNA_4334 in Rhodosporidium toruloides IFO0880

Name: 12702
Annotation: K10534 NR nitrate reductase (NAD(P)H)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1075 transmembrane" amino acids 947 to 967 (21 residues), see Phobius details PF00174: Oxidored_molyb" amino acids 283 to 471 (189 residues), 186.5 bits, see alignment E=8.3e-59 PF03404: Mo-co_dimer" amino acids 505 to 631 (127 residues), 129.1 bits, see alignment E=3.1e-41 PF00173: Cyt-b5" amino acids 684 to 756 (73 residues), 50.3 bits, see alignment 5.6e-17 PF00970: FAD_binding_6" amino acids 798 to 850 (53 residues), 35 bits, see alignment 3.9e-12 amino acids 879 to 927 (49 residues), 29.1 bits, see alignment 2.7e-10 PF00175: NAD_binding_1" amino acids 948 to 1056 (109 residues), 78.2 bits, see alignment E=1.9e-25

Best Hits

Predicted SEED Role

"Nitrate reductase [NADH] 2 (NR2) (EC 1.7.1.1)" (EC 1.7.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.7.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1075 amino acids)

>mRNA_4334 K10534 NR nitrate reductase (NAD(P)H) (Rhodosporidium toruloides IFO0880)
MPHRQHRVVVKGHPGSSSQEIEDEPDWSGGHQHRVGFRNRDGRMPGLAPGSSIEVDEAEQ
ERHAEDVAHAKAQLETLGEERSEGRLVNFREIVERQDDLHLRYPADRPIGWRYVLNETED
WVKNEQDWPANAKKRSQQQQQQGDDKKEHERDEPEKEQKPTEGMQQGTRSDDGSKGGDDS
GKGDQQRSPREQALLENLKGELEYVAGLQMNDGSGRAMPRGLRNRTDISIDEQDQFSPDN
WLPRSADLVRLTGKHPLNAEPHLTELFDAGLITPNELHYVRNHGSVPRIMWELHRVDVEV
DGDLGLGPGARLSLSMDDIKDGFKAVSFPVYLACDGNRRKELNMIRKGKGFNWGAGAVGC
AYWKGTLLRDVLASAGLEPDKVEAQLQSRQLWVNFAGQDELSEGTYETCIPLAYAMNSHN
DVLLAYEMNGVNLPPDHGYPVRLVVPGFVGGRCVKWLRRIWITERENSSHYHIWDNRVVP
AFVRSADEDDPLAHTMFHHPDTKCNEQNLNSVIVRPEHGETVSLGSAAGGRSYRIEGYAY
DGGGLEVQRVEVSLDGGDEWLYCVRTFPDQPVRHGTKFWTWLHWHVDVDMAQLLNAKSIT
VRAFNSTKNTQPERPVWNVMGMMNNCQYVVRSEVQQQQGQDGLSVVFRHPVEPGTGEGGW
MQPSEENRIAQAKQEAGTPEKQFSREEIEKHSRADDCWIVVDGKVYDATSVLDWHPGGKA
AILSHAGKVHQQTTDEFASIHDDYAYGKLKDCILGSVTDKAKQFIKRSAEAAAKEAAASG
SNDADQKLALKKHRWVPVRLLDRRDVSHDTRKYTFQLPDGKDTLGLGTCQHVLIGFHMPD
RMLIRSYTPTRPLLPARTGSHAEGGGAANGVEEEREALEDGQGTFDLTVKTYFPDANQPG
GALSNILDCIPIGEDVEMRGPTGDIVYEGNGTFTLGEGQQRHFSRVSLVLGGSGITPGFA
LIARILLSAKDETQLRVVDANKSEDDILLRAELDRIEKEAKEGQLRITHVLSHPASDEWT
GRRGHVDADLLRDALFPPDKDSVVFLCGPPAMIQKAALPALRDWGYVEDENMFGF