Protein Info for mRNA_4334 in Rhodosporidium toruloides IFO0880
Name: 12702
Annotation: K10534 NR nitrate reductase (NAD(P)H)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Nitrate reductase [NADH] 2 (NR2) (EC 1.7.1.1)" (EC 1.7.1.1)
MetaCyc Pathways
- nitrate reduction II (assimilatory) (1/2 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.7.1.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1075 amino acids)
>mRNA_4334 K10534 NR nitrate reductase (NAD(P)H) (Rhodosporidium toruloides IFO0880) MPHRQHRVVVKGHPGSSSQEIEDEPDWSGGHQHRVGFRNRDGRMPGLAPGSSIEVDEAEQ ERHAEDVAHAKAQLETLGEERSEGRLVNFREIVERQDDLHLRYPADRPIGWRYVLNETED WVKNEQDWPANAKKRSQQQQQQGDDKKEHERDEPEKEQKPTEGMQQGTRSDDGSKGGDDS GKGDQQRSPREQALLENLKGELEYVAGLQMNDGSGRAMPRGLRNRTDISIDEQDQFSPDN WLPRSADLVRLTGKHPLNAEPHLTELFDAGLITPNELHYVRNHGSVPRIMWELHRVDVEV DGDLGLGPGARLSLSMDDIKDGFKAVSFPVYLACDGNRRKELNMIRKGKGFNWGAGAVGC AYWKGTLLRDVLASAGLEPDKVEAQLQSRQLWVNFAGQDELSEGTYETCIPLAYAMNSHN DVLLAYEMNGVNLPPDHGYPVRLVVPGFVGGRCVKWLRRIWITERENSSHYHIWDNRVVP AFVRSADEDDPLAHTMFHHPDTKCNEQNLNSVIVRPEHGETVSLGSAAGGRSYRIEGYAY DGGGLEVQRVEVSLDGGDEWLYCVRTFPDQPVRHGTKFWTWLHWHVDVDMAQLLNAKSIT VRAFNSTKNTQPERPVWNVMGMMNNCQYVVRSEVQQQQGQDGLSVVFRHPVEPGTGEGGW MQPSEENRIAQAKQEAGTPEKQFSREEIEKHSRADDCWIVVDGKVYDATSVLDWHPGGKA AILSHAGKVHQQTTDEFASIHDDYAYGKLKDCILGSVTDKAKQFIKRSAEAAAKEAAASG SNDADQKLALKKHRWVPVRLLDRRDVSHDTRKYTFQLPDGKDTLGLGTCQHVLIGFHMPD RMLIRSYTPTRPLLPARTGSHAEGGGAANGVEEEREALEDGQGTFDLTVKTYFPDANQPG GALSNILDCIPIGEDVEMRGPTGDIVYEGNGTFTLGEGQQRHFSRVSLVLGGSGITPGFA LIARILLSAKDETQLRVVDANKSEDDILLRAELDRIEKEAKEGQLRITHVLSHPASDEWT GRRGHVDADLLRDALFPPDKDSVVFLCGPPAMIQKAALPALRDWGYVEDENMFGF