Protein Info for mRNA_4339 in Rhodosporidium toruloides IFO0880

Name: 12707
Annotation: K17677 IRC3 ATP-dependent helicase IRC3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 942 PF04851: ResIII" amino acids 97 to 248 (152 residues), 66.8 bits, see alignment E=3.8e-22 PF00270: DEAD" amino acids 101 to 252 (152 residues), 31.6 bits, see alignment E=2.1e-11 PF00271: Helicase_C" amino acids 442 to 540 (99 residues), 42.5 bits, see alignment E=1.1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (942 amino acids)

>mRNA_4339 K17677 IRC3 ATP-dependent helicase IRC3 (Rhodosporidium toruloides IFO0880)
MLGRGLRWSAWPPGLSLARPTLPPRRLLPLASSPAFSRPVSLHAAQRPGRLIESVSKQPP
ISSRHLATAAAASRPPSSPPPNTPRSSRDSKPQRNLFNLRPYQQECVNSVLDELKKGEYS
RLGVSSPTGSGKTAMFTNLISLIPPRIHPVTGERADQVLVIVNSIQLATQTGGAIRRAYP
DLVVDVEQGDSRGSGLGHVTVATFQTLARDNCARLEKFIPERHKAVIIDEAHHAASPSYI
EILTRFDSEIEKRFEAEVSGTGEAQEMIKASRITSKDEVDALQSAAAAREVEAEEGFEPL
PEEEEEVDDILEVASSPAAAAAVAASSPVPIPNPDPDPVPLKLDSLGRARVPLIAFTATW
GRSDGIALGKVFEKIVWHGEWLDMIRGKWLSQLQFTTIRLGDRLNLDEVDVSRQTGDFVP
SSLANAMDKSEVNNFAIDAWFEKAQDRRSTLIFAASVPHSVNLANAFRERGIDARFVSMA
TKQADRAELYRAFRAGEYPVLINYGILTEGADFPEIDCVLLARPTKSQNLFLQMIGRGLR
LSPHTDKKDCLVIDLLGSAERSGGMMCTPTLFGLDPDTEIIGKSTEELEEMDKEEEEGEE
EEQEEKSPVRRLHSIQYQHFTTAFDLVEHLANPRDPKTGENVAPETRRWTGEGGNSVARL
SRNAWVGCGNNVFILQLMNSGWVKMSPHPEHGFMAQIFRSFPDVGERKSQAVFSQTIATG
YSPRECLLKADTYLRNHRTFKTYSLGRYAKWRSGEATDRQKEMIINRLIPKKDRENGKTT
ISGVWVGKPMDIEVDIMRPGGLTKGQASDIISRCKHGAIAHWKRTQSAIKKEERQIASER
KKAEQERIKIENKAERERAAAQKKADQLIATVRARRTRKEEAAAAAGDEANEGNVEEKPK
KRRTRKKVGEDADGQEGAEAGEEKPKKRRTRKKADEEVAESP