Protein Info for mRNA_4341 in Rhodosporidium toruloides IFO0880

Name: 12709
Annotation: K08266 MLST8, GBL target of rapamycin complex subunit LST8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 PF00400: WD40" amino acids 113 to 149 (37 residues), 41.5 bits, see alignment 2.4e-14 amino acids 155 to 190 (36 residues), 16.8 bits, see alignment 1.5e-06 amino acids 245 to 280 (36 residues), 20 bits, see alignment 1.5e-07 amino acids 313 to 349 (37 residues), 28.4 bits, see alignment 3.4e-10

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>mRNA_4341 K08266 MLST8, GBL target of rapamycin complex subunit LST8 (Rhodosporidium toruloides IFO0880)
MPTRVHLPQTAHLPPQATQPGVPPQAAQQQQVQQSAAADALSVILVTGSYDGTIRYWEAW
SGICSRTIQTQDHQPNRLAISPNKRFLAAAGVGTVKLYDIAQSAAASSTNVAPLVTLQGH
TANVTSLAWQNEAKWLVSGSEDGTVKIWDVRTSSPQRNYAHFAPVNDLALHSNQGELVSC
DQNGAIKVWDLGGDRCSHELLPEEDVPMRSVSIASDGSALVGGNHKGVVYVWTIQPGLAF
TDLQPKTRFQAHSRYLIRVLVSPDTKQLATCSADTTIKIWTPILSPQAAALAAQADPNNL
YARGGIADGTGYQLEKVLQGHQRWVWDMAYSADSAYLVSASSDHTARLWELSSGTTVRQY
SAHHKACICVALNDSSS