Protein Info for mRNA_4361 in Rhodosporidium toruloides IFO0880

Name: 12729
Annotation: K10576 UBE2H, UBC8 ubiquitin-conjugating enzyme E2 H

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF00179: UQ_con" amino acids 12 to 142 (131 residues), 129.4 bits, see alignment E=4e-42

Best Hits

Swiss-Prot: 76% identical to UBC8_SCHPO: Ubiquitin-conjugating enzyme E2 8 (ubc8) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K10576, ubiquitin-conjugating enzyme E2 H [EC: 6.3.2.19] (inferred from 82% identity to pan:PODANSg3119)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 6.3.2.19

Use Curated BLAST to search for 6.3.2.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>mRNA_4361 K10576 UBE2H, UBC8 ubiquitin-conjugating enzyme E2 H (Rhodosporidium toruloides IFO0880)
MSSPKRRIETDMMKLLMSDYEVNLINDNMQEFYVKFKGPEETPFAGGVWKIHVELPDGYP
YKSPSIGFQNKIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNAADPL
NGEAAALLMRDQKAYDAKVKEYVQKYASGGAADGNGEDDSEDSDSDVRFAFLESRSWLPS
KLAIGQVDMH