Protein Info for mRNA_4371 in Rhodosporidium toruloides IFO0880

Name: 12739
Annotation: K10877 RAD54B DNA repair and recombination protein RAD54B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 626 PF00176: SNF2_N" amino acids 1 to 251 (251 residues), 182 bits, see alignment E=2.8e-57 PF04851: ResIII" amino acids 2 to 140 (139 residues), 32 bits, see alignment E=2.5e-11 PF11496: HDA2-3" amino acids 261 to 454 (194 residues), 34.8 bits, see alignment E=2.2e-12 PF00271: Helicase_C" amino acids 314 to 422 (109 residues), 56.2 bits, see alignment E=8.4e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (626 amino acids)

>mRNA_4371 K10877 RAD54B DNA repair and recombination protein RAD54B (Rhodosporidium toruloides IFO0880)
MGLGKTIQAITLIWTMLKQNPYQGDKTGVVDRAMIVCPVTLIKNWSQEIRKWLGRDRLRV
YVADSQHPVRTFATSKNYGVLIVGYEKIRDCADDVKFAQPPVGLIICDEGHRLKSEKAKT
TQALQSLSCMRRVILSGTPIQNNLGEFFAMMDFVNPGLFNDANYFKRNFEAPILASRQPN
ATAKAKKAGEEAFELLTSMQRNFVLRRTNEVILKHLPPKLEYTVFIRPTKLQLDLYAQVL
SSSAVRSMLEGYEVAAGLALLQTVVKLANSPGLLFKHIEAKGLGQLDPSVQDIFPANIDA
ADVALSGKFLLLAAMLAELRETTDEKIVVVSNFTATLDLIEAYCKRKKYPYCRLDGKTPQ
QDRIPMVDGFNRGSHKNNFVFLLSSKGGGTGLNIIGASRLVQIDSDWNPSNDLQAMARIH
REGQKRTCVIYRFLTVGTIDEVIYQRQITKQDVSEAVMDAESKGRNTFTTAELRNLFTLH
DDVACQTHELLGCRCHFGEVDEDEDEDDGGSDESESEDDGGGFMQASQYQDGEAARQLKK
KRRHLSALKTWTHYNCTDETSIDDIEDGLLRSAIYMLMGDSDEDDGIIQPQGNGRLILRR
GQVGFVFGKKTGADEAAGAVESKEEE