Protein Info for mRNA_4398 in Rhodosporidium toruloides IFO0880

Name: 12766
Annotation: HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 58 to 76 (19 residues), see Phobius details PF00583: Acetyltransf_1" amino acids 53 to 175 (123 residues), 35.1 bits, see alignment E=2.8e-12 amino acids 314 to 375 (62 residues), 21.5 bits, see alignment E=4.8e-08 PF13673: Acetyltransf_10" amino acids 124 to 182 (59 residues), 30.4 bits, see alignment E=7e-11 amino acids 328 to 385 (58 residues), 27.2 bits, see alignment E=6.7e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>mRNA_4398 HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 (Rhodosporidium toruloides IFO0880)
MLQILPATAEDVPRLVEIGHSAFAGNALDRAVFGDVDPQVHREHSIKRQTKMLEKGEMFF
LKAVVAGEIVGVAIWAPPKKEEDKAKEKKEEEANKEKEWPPGTNVELATEMFMHDAGIKE
PHYYLCFLSVDPKYQRNKAGSTLLRWGCKKADQEGVAVHLDSTKVGMPVYERAGFEPFGP
PHVSKIDPQHALYPMRRAPLSIQPATLTDLPALAPIHRLAFFPGAITQYCFRDVSPSNFD
AWFVKRFAGVLEKRDKGEKVEVLVGKRGDKAVALVYYGLELELEKREKDDTPRQFPEGAN
VEQAMDILGQMDAHIKKIPFAHCSWHIISVHPDAQGTGVGWKMMQAVLEAGKAAGLPVTL
EATEEGRPMYQLAGFKDFAEVIVANDDDSVKLWPMIVEHSKA