Protein Info for mRNA_4421 in Rhodosporidium toruloides IFO0880

Name: 12789
Annotation: K17765 MDM12 mitochondrial distribution and morphology protein 12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 transmembrane" amino acids 267 to 287 (21 residues), see Phobius details PF10296: MMM1" amino acids 236 to 388 (153 residues), 34.8 bits, see alignment E=5e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (391 amino acids)

>mRNA_4421 K17765 MDM12 mitochondrial distribution and morphology protein 12 (Rhodosporidium toruloides IFO0880)
MSIDLDWSLVDATLTQSATAFLANAFDAAPRPDFLGPLSVTTFSFGDTEPQVELLDIRDV
QKDFLAAEDGDEDELVVPRPGGLAGQRMATMDAGGAMNGAGVSPSESPDELFPRRSFPFS
PTGSVTGVLPTPHPPSAALFAPGLHSHSIPSAAPTPFGPRSRSRSHSPAPPLRANLFLPD
PPSLGLAGAGLHTGGGHSRSHSQQTHPHSYAPPSPTPSHSSLPFQPAASSAPSPSFQLHL
RVSYSGNLSLGISTSLLINYPSPGFMSLPLELTVTGLAFEGVLIVAFEGGRRRLHLSLVE
AAESDPTITPSRRLSGTFSRPSGLGPNAAGMKPAASVGARILRSAQVESEVGQADKHVLK
NVGKVEKFVLEVARKTLENELVFPNFQSVLY