Protein Info for mRNA_4422 in Rhodosporidium toruloides IFO0880

Name: 12790
Annotation: BLAST Regulator of nonsense transcripts UPF2 [Grifola frond...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1194 transmembrane" amino acids 706 to 726 (21 residues), see Phobius details amino acids 738 to 759 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1194 amino acids)

>mRNA_4422 BLAST Regulator of nonsense transcripts UPF2 [Grifola frond... (Rhodosporidium toruloides IFO0880)
MADDDEDFELQDGLDDLDWTDPSLLAQLDGATQAGAAQGQGLQVPRASQVPPKAAPLPVQ
PQRLPQQQQRRPLAPPPPGPSQFPQSTQFPLGTARPGGVLRPPQPPPRKRARVNGPPAAP
APQAKAVQDVDEDLPEIRVVDGAQVNGNGAATSGTIYRTEPERGTTIAFPPPPVPRPAVP
AQASVQHHQPTTTTRQPSVQPVARQASVPPPVPQHRPQVALNQPQALARAASESAAAIRS
RSLGSDGAAGGNSMSEVEKRELEALRREKAKLQEALNAAKKTEEELKKQVMTKSGENSII
RNRLSKAESAHALALKNEQRDKAQLAEQLEAKEREHKQALERFKIEEVFRRQELATAGPS
SASSQRHYHHPNHPNLGSAQASRFYSRGASAAPGVSRDAPASPSLRRSSRAASERPNGIA
QPKTPAPPAGPPPPTFSSFQNSFAAGSTAAAGKKGKAREAVEREGSMGPPKQAVSAGGRR
EAAVTTPTKRRRLDNGEMSERMLVEEDGQDLGGFEHGDLSMVQEEDEGIGELQWEWLAEQ
RDTRSELVSAVFTHTSLAPIDTEPAVVLAKPGNAAARPATYAATHASTARATASARNAHS
STFSGRTSTGAAAAAQQASASQPSGPYPTFHALMNLRFPSSTPPALVAEYDSITRDLFTL
LGRRLDPHSSPFPSSSSSSTSPVLPPSLSLGRAYSLDGAHPTLEPLVLAYGLASHFASLL
QVLEAGTLSGPMTALLKLMAHLAFLFPTFALACCAVTTTPTVRTNHTATQQVQHSHVPVP
LLVLLGRIIARYGRPELPSRDSLLPRGSGPAGSTLTTRPAAIRSRKARVARTSSAAAAAK
ADEDAQERVQLEKGKRGALLEAVLGVLEGVAWRCLAVRKGEEVELGVGEETRLAEESFKA
LLQMPNAVATLLDPNHPLPISLASVRLLASLACRPPLFRSILGIKFYEMADVRSSRIPLV
DRLATLLVMPRTDSITASAFDSTILTFASILLSSHDDAIRLFAQSAAFVPELLAKMWRDV
RTVWEHDGREVSQGGKQRAMLDRTVARLSHLIHLFYYLSLAPHSVPIAELLAGPSTLAST
TSAGAAQTPQQAYQRQAVNDLFMACFGTVAFATLGGESEEEGSAEGAIPSWAEQGSEQRR
MLVELGYLAQEILEDVSPDELEEIEECFGLTDAENDREDEAGEEADVQAMALEA