Protein Info for mRNA_4426 in Rhodosporidium toruloides IFO0880

Name: 12794
Annotation: HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 PF00646: F-box" amino acids 91 to 126 (36 residues), 24.4 bits, see alignment (E = 1.1e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (704 amino acids)

>mRNA_4426 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383 (Rhodosporidium toruloides IFO0880)
MAGGRVATRTSYKEADSDDDWLASDEEGATKVFEDLPLVKGAKGKAGGAQASKRVGDTYG
AGPRKKAKKSKGKGKAKAKEDEDESLFSLDLLFRLPNDLFLEICGYLDGRDLLEFSRTCK
TMRKTLFSPNSGYIWANSRRRDDIPLPAGMTELELAALLYSNGCQICGNTTFYFRRQIKL
RFRSCAKCRKKYVIHASSCGRAWPNLHYSALFCVAGDDGDRDPPETPVVMNNDEFLIAEV
QQVNSELLELKEIDELASFAAETSGRRTSGTKRSPMKLPNLVDAYCAEKKAEVKAKQQES
AALLQAFKAKQKRDSEEAERLTLARDEVAKTYAEELKSKYGWTTSEADWYTRHSWWLPKM
KNAPPQKAPSASEQAWTVYRDYVQTQVEREAKSEERSATWRRHYKALSPFYQDYRRTTTR
DPAFLPSPIAFAGNVRKTWLGPDDPSFDADLWSARLPEIVRKLDIYERELRVTAIRAILN
ATSSIPFADLSTDPADYPDAKYDDDFFQKPTSLFVGRAGGLFGPFYAVAYPDCLRMFRDQ
PYKCPESILLDSINERQVLFLRMILDAADIDESMATIRDLDTMGARFKWTNAPSVRKQAR
LYSWDDLLFYLNRRGPSLKRLKAGDLPEIEFVRVAAGDDEKRDSEEDGSGDDDNPDSNSN
ADADADDSDSEARPSSRRRFLRSSDGDTEDEEEDEDEEEDEEDD