Protein Info for mRNA_4428 in Rhodosporidium toruloides IFO0880

Name: 12796
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 signal peptide" amino acids 1 to 66 (66 residues), see Phobius details transmembrane" amino acids 423 to 440 (18 residues), see Phobius details amino acids 452 to 472 (21 residues), see Phobius details amino acids 500 to 517 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (551 amino acids)

>mRNA_4428 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MRMRQVCRSWRAESGRGAEHGWLWRARERERRLLMVRGREMREARSCCRLSQCLRLFLLL
QRSHTFDVLLSRPREVLEVRGNDGLCCSRWIARLPCERVVEAGKVVASAEETCSSAPACC
RTFPTGSCRASSSGRSTAHPTSVSSTRAVRLVTESSEKVVLQAEQGRVEVDAGCSAEVRV
LSAGGRSIRLLRLRRTTAVPAAKWRLGLRDESWDAFGADFVDVSFLQESGIFDWQRAVNS
QAEQSVRAVLLNGEAYEVVLQELRLLLDYEFGLLLVLRRESREIGKVERDGVRDWLKRLR
HAGDMRLLGAHEILHFLRQLALSESAVRLSRSQAVYSSAQSQLSLNLVLLIRSEAVLYAL
VGMHQLEPVPVRVVELPELGIVVKRKRTTRGKWRSLRRTWMVMRKSEGVLVLEQLASSSI
SEIRQLFLLLLLLLLELLLAKLQHLGCRQLDLLVELLFTLLRLFHDAILVVFENVLEGVL
HLTRLLGLEPSDVCFELCEILVLLLLVDQSTLLDNLLLRKLARSALDFLRQLLLSGLLLR
RRESLCGTSDQ