Protein Info for mRNA_4437 in Rhodosporidium toruloides IFO0880

Name: 12805
Annotation: KOG4629 Predicted mechanosensitive ion channel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 transmembrane" amino acids 97 to 121 (25 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 216 to 240 (25 residues), see Phobius details amino acids 437 to 457 (21 residues), see Phobius details amino acids 460 to 462 (3 residues), see Phobius details amino acids 468 to 492 (25 residues), see Phobius details PF00924: MS_channel" amino acids 436 to 596 (161 residues), 88.8 bits, see alignment E=1.9e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (722 amino acids)

>mRNA_4437 KOG4629 Predicted mechanosensitive ion channel (Rhodosporidium toruloides IFO0880)
MNEKGGTSAPGSGYSTPRSRSAERSRGGGLGQWSGPAGGNSPYGRLGDSGPGTGTQTPNG
GWSAASSNPNVQFADGDFIRPTNWFSRMVFAIYNSHYIVRWTIYILPVLAILWIPAIVQW
SSKHGATIWTVELVWWSIWLTVVWTGYWGAMLVGRLGPTLLNKTLGVVAPELRHYIAYVK
AIRFYASLAGWALANWISFLPLIRRHEQSNKSDNTLYLITQGLFGIFIILVILLIEKLII
QIIAHNFHKRSYEDRIIEQKFQIGALVNLYLNSRDIGRSDTLDGAFKRPRNKRQVSDPTL
LIKKALKGAQKAAQTATTMIGTVASEIAGERVLQPNSPPSMVTSALQSTNKTRQLARRIY
YSFTPQYREGMVITDIERCFPNREEAERAFAIFDRDLNGDATLDEVEMACLDIHRERLAL
GRSMRDIDSAVGRLDNIIMSIWYVVAILIMVGLLDASFQTMIAGAGTFILGLSWLIGTTA
QEILASVIFLFIKHPYDVGDRVSIDAVDYIVLEMHLLSTVFKKIDGTVTQAPHSLLNTKF
VMNYRRSNSISETFTFDVDFGTSFEKIEALRSRMLEFLQQERRDFVPTIDITVQDFAAQG
KLSLSAPINYKGNWQNGALKVQRRNKWVCALKVALAELQIFGPAGAGDPSPAPPDPTPYT
QVPWEEVKADREAAAAKAAAQAGTATQDVHLQHAAEFGEHLISDDDVRQEEAGDGIRYRR
HM