Protein Info for mRNA_4448 in Rhodosporidium toruloides IFO0880

Name: 12816
Annotation: KOG3979 FGF receptor activating protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1081 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 202 to 223 (22 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 338 to 361 (24 residues), see Phobius details amino acids 388 to 408 (21 residues), see Phobius details amino acids 419 to 440 (22 residues), see Phobius details amino acids 477 to 497 (21 residues), see Phobius details amino acids 518 to 537 (20 residues), see Phobius details amino acids 544 to 565 (22 residues), see Phobius details amino acids 571 to 595 (25 residues), see Phobius details amino acids 605 to 627 (23 residues), see Phobius details amino acids 639 to 655 (17 residues), see Phobius details amino acids 676 to 695 (20 residues), see Phobius details amino acids 711 to 728 (18 residues), see Phobius details PF10277: Frag1" amino acids 25 to 232 (208 residues), 123.1 bits, see alignment E=6.3e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1081 amino acids)

>mRNA_4448 KOG3979 FGF receptor activating protein 1 (Rhodosporidium toruloides IFO0880)
MKEGKNAADLPNDLLCAVHAERLAQLHTLLSAAAFLSALVLGISLHYHKIVRNQYYGYPD
EWFPSVSATIGDWYPERNVFHLLIALTSGPRFLLMLLTFLAHRLQRPTSSLPSTLAVAAV
LRTLLCGGWVYVTSSDHADAHDACMVLYIVSNLPYMTLQVLLTPNTPAARRAKSARRLLG
TSFFATLVPLVYFYLRHKSHRIAGAYSIYGLFEWTLIVLDIGFDSVSILDFAAPTAAGSE
GVADPGTGVELAVRAASAETTASESNGVYLSPADPTAEAQEPGAVVKALRRLDMASRGVR
GWAAEVYLAFLFWTNLTAIGPMIFYSSVWAMGLSGDEVALFCIISPVILSLPIPFLSSFL
LNSPTFGDLGLLVGVASRYLEGEGAERLRAAAFGVGLAAIARVASWWEVRKDPARLEGRA
LVFLLGLVFSVLIKFANYSLNPLWPFMRSSPNLKEENGGWNGVGLAVAPTNGAGHHWLAG
IASTIGFGSLFFLLHYLCTDSGTTIAWSWNGYPSTGPFAFPHGASTIAALSAGILVASTP
RYVAIARSPVAFAAASAFAAALYAFDSWPSFLGGCLLGICAVSLFPSFLSSILAASTSSP
GIPFALAFFYYAVLELASTWTVAYAFVPAGWLLRERTDVVLGWTMAGVGIGLLPLRRLAA
SQASSPTPTRSRRTSYLHITLLFISLASVFSIIHHRSFFQPGVPYHAEERLFTAGIWTVH
FGLDGYMWESSRRMAQFFKEAEVDVIAMLETDDHRVVGGNRDITQYIAHSLNMPYVDIGP
GPQKNTWGAALISKFPILRSSHHLLPSPNGELAPAIYATLDVYGTEVDVVVAHNGQEEDP
LDRELQSKELGRLMRESWPKPTVFLGYLVTTPHAERPAPYKLVVDDGKMLDISPKDLDRW
CQYILYRGLHRIGYARLSRGSNPSVTDSEAQLGKFVVPLPRANKSSYTRSAEAAKAAFAM
QQEGRNATSTEDEDEEQKEEKALRIPPIPLEDYVSHLHASPAPLDTDSTVWTPERYMPPS
LRFPAQFYEGNAGGHRYIVLTGEKGGEGPNYMMDPEEKEWRRLWEIDELERLASTGECGV
Q