Protein Info for mRNA_4470 in Rhodosporidium toruloides IFO0880

Name: 12838
Annotation: K05292 PIGT phosphatidylinositol glycan, class T

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 353 to 372 (20 residues), see Phobius details PF04113: Gpi16" amino acids 66 to 131 (66 residues), 51.8 bits, see alignment E=2.6e-18 amino acids 150 to 389 (240 residues), 208 bits, see alignment E=1.2e-65

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>mRNA_4470 K05292 PIGT phosphatidylinositol glycan, class T (Rhodosporidium toruloides IFO0880)
MSGKGGKRSRVPSAGCFVRVLWRTASRRARAARLGPFRSTARETSEVRFLLFRVDEGLTD
IVRPTEYNLYRLTMPRLAAACTESLTPFLSLLPCSYHAGLSSLLNPHRLFDGDFTLIGVK
FLLKEAEQKAAFELEPDLAREVTKIDGREVAVWDVKRALETAALDVRVTWPGESVFHNPS
PSKLPQAPIAVRRLLFGVGQERGRIGVELVNNEEVEHEVVWSEVWPWWLRAFASTLETQT
DGQSAPERILDLDYTPSIARERPTTLQALLRLPPKSTTRLTLAYESASLWYTEYPSDSNR
GFSVPGATVVLLPSAEGDSSSLRRRGVLRSRRPVLRLQTPTTLLSLPTPDFSMPYNVIIL
TSTVMALFFGSVMNGMIRRWWIVDVGESGSAKTKVQ