Protein Info for mRNA_4474 in Rhodosporidium toruloides IFO0880

Name: 12842
Annotation: K01426 E3.5.1.4, amiE amidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 PF01425: Amidase" amino acids 78 to 539 (462 residues), 303.6 bits, see alignment E=1.4e-94

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (556 amino acids)

>mRNA_4474 K01426 E3.5.1.4, amiE amidase (Rhodosporidium toruloides IFO0880)
MPSVDSKDWKSAADAKREAFKKQVDSYAYALPKVDSSTLDVSTVSLDGVMDPKHVQITNM
EVGELVEKLQKGELKAVEVTKAFCHRAAIAHSLVNCLTEVYFDRAIKHAEELDEKFKQGG
PVGPLQCVGLPISLKNQICVEGVESNMGYVGWIGRVPKKNSVLADCLVRSGAVLYCQTNI
PQNLMSTECINAIYGRTVNGFNRNLSCGGSSGGEGALVGLRGSLLGFGSDIGGSIRVPSS
FNGLYGLRGSYNRMPYGGADNSCQGLEAVSSVLGPLTTSVEGLQIVTKAVLAAEPWRKDP
FVHYQPWRESVYQLEAHGGGKEKLCFAFAYSNGLVKPNPPYYRAMDMTRKALKAQGHKVI
DWSFPEPEKCFDILSRVYGADSGEDIETECGRSGEPRMYGLCPPENPPRISVYQYWQLCY
ERRLFMATQIEAWEATESQTGTGRPVDAVIMPTSPYPSFRHDDQQDVSYTGVCNLNDWPT
AVFPVTRVDPSVDKQQPAHNFHRDYPFDKINYERYDPEVFKNAPIGLQCIMRRGEDEAVI
RVVEMVDAALKAQKKA