Protein Info for mRNA_4477 in Rhodosporidium toruloides IFO0880

Name: 12845
Annotation: HMMPfam-CFEM domain-PF05730,SMART--SM00747

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF05730: CFEM" amino acids 23 to 90 (68 residues), 30.4 bits, see alignment E=1.7e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (291 amino acids)

>mRNA_4477 HMMPfam-CFEM domain-PF05730,SMART--SM00747 (Rhodosporidium toruloides IFO0880)
MKTTAAIASVAAFAGLAAAQLPANAPVCATRCFTTKVMEAGTLAPGVSPTDIAGLCRSAN
FVQAYANCLGDHCTGNDYTTGITLGQAVCANVGASLPSTGVTGSATDVLRTLSSVPVSTG
SETASAAASFSSALAAAGGASSGASMSGSSMASGASSAAAGAMSSGASGASSVTSGAAGA
ASTGMSGASGAASTGMSGASGAASTATSGAGGAASTVTSGAGGAASTVTSGAGGVLSTIT
SGAGGAISTATGAAGSAASAATGGAKNAGNNLFVPTASLLGAVAAAIACFA