Protein Info for mRNA_4485 in Rhodosporidium toruloides IFO0880

Name: 12853
Annotation: K01293 E3.4.17.4 Gly-Xaa carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 591 transmembrane" amino acids 54 to 69 (16 residues), see Phobius details PF01546: Peptidase_M20" amino acids 192 to 584 (393 residues), 111.3 bits, see alignment E=5.7e-36 PF07687: M20_dimer" amino acids 314 to 458 (145 residues), 36.4 bits, see alignment E=4.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (591 amino acids)

>mRNA_4485 K01293 E3.4.17.4 Gly-Xaa carboxypeptidase (Rhodosporidium toruloides IFO0880)
MRAGSPSASAAAPLPRPRPTTTMGKEESLPLTAPAPSSSSLETTRTPSSFSRRIAALALL
LPVASWLSYPTDALAALPVGRPCRHELASGKGASCPTQVDPLNVGPDWLPEQDDEYKKLA
TERLQGAVRIRTESFDDMAGPEDPRFEPFGNLHTYLESTFPRVYSTLQVEKVQKYGLLLT
WKGEDEGLKPVVLMAHQDTVPVPAVTEDRWTYPPFDAHLDEKGWIWGRGTADCKNTLIGI
FGALDKLIEEGHAPTRTIILSSGFDEEIGGSRSAKYLASTLEERYGKDGVAWVLDEGFTG
VDEAYGRTFARFGTAEKGAVSIKLDVLTPGGHASVPRRGHTGIGILAKLVSVLEEHPDVP
RLREGNPLLGELMCAAEYGEVDRKWRRRVKDPKQWKKLGREMAEEDDIKRAYLSTTQATD
LIHGGVKINALPEYASASINYRIDFLSSVNATLSRLLSILAPTVKGFNLTFDAYGSHSDI
ENDVVRLQVIEGSQIEPAPITPTEGTAWTLMAGTTRHVWKDAIVGPSGMVANTDTKYSWP
LTRNIYRFVPASLSLIKDFHTVDERIHIDAHLNGIRFFYKLLRNTEGWEAP