Protein Info for mRNA_4489 in Rhodosporidium toruloides IFO0880

Name: 12857
Annotation: KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF00106: adh_short" amino acids 26 to 68 (43 residues), 25.5 bits, see alignment 1.3e-09 PF08659: KR" amino acids 26 to 140 (115 residues), 24.2 bits, see alignment E=4.3e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (365 amino acids)

>mRNA_4489 KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (Rhodosporidium toruloides IFO0880)
MSNIVGKLFGFHFAQANVPQLVGKRFVVTGGTNGIGLSAARTLYSHGAEVVILGSQEGTA
DAAEEYIKTGDLKRAPKDYQDGFAGIVGDYADNSADGGNQSGEVSSRVVDFKDLKAVSKV
GKELAEKYDRLDGFLGIAGLGVNKFTLTADGYDAHLTVNCLSHILLLSYLLPNLEKTSRT
HPDADVRIVLMSSELHRNTFGGPSENWGGNKFRDAGEFAKDVGPANLYARSKVGQTLIAK
ALVQRHLQPPSKILAYSTHPGAVATGQTRQYDEAYGDAVGGAIQAAVRPLMRAPDEGALS
VLWAATSAEARTGGYKNGEYFTDPAQEGKPSSEATDQELIDNFFNTGLEVIKKVVGQEGV
GHFSA