Protein Info for mRNA_4539 in Rhodosporidium toruloides IFO0880

Name: 12907
Annotation: HMMPfam-DNA polymerase subunit Cdc27-PF09507

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 PF09507: CDC27" amino acids 20 to 358 (339 residues), 65.1 bits, see alignment E=4.4e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (418 amino acids)

>mRNA_4539 HMMPfam-DNA polymerase subunit Cdc27-PF09507 (Rhodosporidium toruloides IFO0880)
MDQQKAFGRITKRVHIEKAVLTYRLAARELGVSVKDAKALLAAYHASDAAKEREIKAVYL
LSGYLKKGETNGVAMGQDGEDKMDVDGEDGTQATQQTQAEEVNSVRVKTMALVQEDELEA
KRALFTDDPAPSSHIYALSPARLTSLSLLSTTSLSLIPPSVRESKWKASPDDIPAYGGIV
HPDGERKRKPGQGARKSAAMPAAPKAGPSKDKAAVKKEAEPAAKPAKGKGKAKDEPAKGK
TKDEPKARPIGQLGGLFARKFEDKKGKKKAESSDEEDEAESAEEESEEDVKPKKKGSVVP
AKRKSTSPAVSRKKPDPPAAKSKAVKQEADIIMDDDDDDWAMDEEALLEAEREAEKQAAS
KKSGATTNGGGVKKAPALSRTSSSSSSTPQPKAGGSNAKNKSAAPAQQKGIGSFFKKG