Protein Info for mRNA_4554 in Rhodosporidium toruloides IFO0880

Name: 12922
Annotation: K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1020 PF17216: Rrp44_CSD1" amino acids 269 to 368 (100 residues), 58 bits, see alignment E=2.9e-19 PF17849: OB_Dis3" amino acids 428 to 493 (66 residues), 58.2 bits, see alignment 2.1e-19 PF00773: RNB" amino acids 533 to 865 (333 residues), 322.2 bits, see alignment E=1.3e-99 PF17215: Rrp44_S1" amino acids 931 to 1009 (79 residues), 84.4 bits, see alignment 1.3e-27

Best Hits

Predicted SEED Role

"3'-to-5' exoribonuclease RNase R" in subsystem RNA processing and degradation, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1020 amino acids)

>mRNA_4554 K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44 (Rhodosporidium toruloides IFO0880)
MADVHRAPSTITILKKRPASHGGAADECYFRKTARGKLQRVVREHYLRPASDFPPPPKLA
DGLAWVVPDTNAVLHQFDLLASPAFPAPLLVAQTVLDEVRHRSLPLYNKLRTLVDDDFEI
PGGKGKMKRGWTVWNEAIEETFLERKDGESPNDRNDRAIRHLASYYSAILSSGSSTGPSA
KRQKTSSSSRPALSAADIASAPLILLTDDAANLSLALADGLVALTAKDYVSSLPSSQQES
LVDLLAVSGSGLDRDAAGAGRRKGAALYAEHLPTSVLQAGVKAGKFVQGHFNPSQYNFRE
ATVNAASLPKPILLAGLESMNRAVAGDLVVVEVLPESEWKSIGEEVVDEDAKGNDPDADP
VAESGDSTTAPTEGSLHRPSAPTIKPREVQPTGKVVGILKRAFRPYVCTLDRASLPPSAL
TSSASVTVLASPVQRTLPRIRLLTRQAAHLASQKFLVSIDRWPITSRYPEGHFVRVLGQV
GSKEGEVESLLEEWEVPYRPFSSAILSCLPEEGDKWAVPPKGEADVKNVWRAREDLRDEI
ICSIDPPGCQDIDDALHAKRLPNGNIQAGVHIADVSHFVHPDNPMDAEAASRGTTVYLVD
KRIDMLPSLLGTNLCSLRPYVERLAFSVIWELDDDANIVDVRFTKSVIASKEAFTYEAAQ
RRKDDKSLTDPLTEGIRLLNSIAIKLKAKRMAAGALNLASPEVKIHLEQSEQSGPVDVEH
KELFETNSLVEEFMLLANISVAERIYKQFPQTAVLRRHAPPPKTNFEVLQDVLQKRRGMT
LDVSTSGALADSLDKCVDPSFPAFNTLVRIMATRCMLSAEYFCSGSLPASQFSHYGLASP
IYTHFTSPIRRYADVLVHRQLSAAISGLPLHTGLQTRAWVDKTLEVVNKRHRGAQGAARA
SIEFYVALAIQRREEDAQKKAGLGKVGSKVRAEAFVIRAFRNGLAVFVSQFGLEGLVTFK
RDNDYDADSYEIHVPTPAGKSVTIGVFDKVEVEISVEKDKNTQRGKVVMHLVEPVDSRGM