Protein Info for mRNA_4555 in Rhodosporidium toruloides IFO0880

Name: 12923
Annotation: KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 740 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF01494: FAD_binding_3" amino acids 64 to 457 (394 residues), 230.4 bits, see alignment E=3.8e-72 PF07976: Phe_hydrox_dim" amino acids 503 to 699 (197 residues), 117.7 bits, see alignment E=5.7e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (740 amino acids)

>mRNA_4555 KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis (Rhodosporidium toruloides IFO0880)
MSESTHPTVLSKSRRTRRRSAIRRRCLASRPVILLCVQGDPPWPRRSSSCLEELLLIIWF
ASRSVIIVGAGPAGCMADLCLTTYGFKVLHVDNRPTTTEAGRADGIQPRTLEVLRNIGAV
PYEEGKAGLAKRMINQGVRVQEVSFWDPTETEKLARTSRAPSCPDFIDVVDNYTLLLHQG
LIERSFLDEIESRRAFLPANKKAPAPHGNVFRPYEFETCSTDESQEYPVSATFHHGETKE
QFTVRAKYLLGVDGAKSLVRRAISGGQVGDGEWQGKIRMLGDASDIIWGVMDVEAKTDFP
DIMSKCLIHSRSDGSIMVIPREAGLVRLYVQLQAEAGPDGKQKHYGRDATEDICKSRARK
IFEPFQLEFGKTAWFSVYQIGQRIASNYTLDHRVFLGGDATHTHSPKAGQGMNISMLDMY
SLAWKLNMVEKGVASRDILLPTYEQERKSVAEELLKFDKAYSTLFSGRSPKSDQLTADAT
KAKARGAVDPELFIETFKKNAFFTSGCGAIYFANQLNALPDSELVKDYPKKGVFNPEGSN
LTAGQRLLPGKVTRAIDANQVRIQQEVKMNGAFRIHVLAGDYDKSKSKLASFDKFLDSSS
SFFNMYRPKNGVSSSIVFNTHETRHIEPERGSREPNYNPFFDFLYIFATPHTEWDIEALP
YNARIYREHIYSDDIYDRRVGKDAKAALHAKYGISTDKGGIVVVRPDGYVGAVVSFDQDG
FEALNAYFAGFMSGSQRASL