Protein Info for mRNA_4556 in Rhodosporidium toruloides IFO0880

Name: 12924
Annotation: KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 TIGR00633: exodeoxyribonuclease III (xth)" amino acids 44 to 330 (287 residues), 101.9 bits, see alignment E=2.1e-33 PF03372: Exo_endo_phos" amino acids 47 to 200 (154 residues), 35.5 bits, see alignment E=4.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>mRNA_4556 KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes (Rhodosporidium toruloides IFO0880)
MPADSKKRPDPPSDAAQRPTKRSRVDPLPGNPLFFYREPKDTIQISTWNVAGLESCNAEK
WNFGFRLYVEAEDPHILAITEVNEKDAEAVFESHPNFEFLRARYPYRYWSHRVAVVSKLE
PIAPPVYGFPEGEKHDPEDARARAITLEFKECFLLATYVVNAGAEFKSLDKRKDWAADFE
PYIRSLDAKKPVIWTGDFNVIRTITPDTTESNDLQWGAQVFGKYSGTSQFERDAHERLLG
DQPWLENPRRPGPKFVDVWRLIKGEKWRQYTHSSKKVGGWRLDGFIVSERFLHNVRKCEI
RQEVKRQFWPPKDSVGKGALSDHWPVWLSLEMEEL