Protein Info for mRNA_4558 in Rhodosporidium toruloides IFO0880

Name: 12926
Annotation: K03320 amt, AMT, MEP ammonium transporter, Amt family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details amino acids 347 to 365 (19 residues), see Phobius details amino acids 392 to 415 (24 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 32 to 444 (413 residues), 407.2 bits, see alignment E=3.8e-126 PF00909: Ammonium_transp" amino acids 34 to 444 (411 residues), 363 bits, see alignment E=8.8e-113

Best Hits

Swiss-Prot: 50% identical to AMT1_SCHPO: Ammonium transporter 1 (amt1) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 56% identity to scm:SCHCODRAFT_70174)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (507 amino acids)

>mRNA_4558 K03320 amt, AMT, MEP ammonium transporter, Amt family (Rhodosporidium toruloides IFO0880)
MPNVTYTPDGSLVATWDPSAGADGVATYSTGDMAWILVAACLVMIMAPGVGFLYSGLLRR
KNALSMLFLAMAVYSLITIEWFFWGYSLAFSETGSKFIGDLRHFGLMNVLDAPSQGSSKI
PALLFAFYQSMFAALTPVIAVGGVAERARLLPVLVVSFLWATIVYNPVACWTWNPTGWGY
INGVLDFAGGGPVHITSGTASLVWSFYLGRRRGYGTAKLAYRPHSVSHVILGTTLIWFGW
FGFNGGSEVAMNLRSVQASIVTNVAAAMGGMTWMIMDLPRFRSIYTRKWSAVSLCSGILA
GLVGITPAAGFVGTPASLAIGAVAAIAANFATGLKVLLKIDDAVDGFALHAVGGYVGSVL
TGLFADSRVVEFDGYTAVPGGWINHHYVQLGWQLASATSILAYTAVMTYILIFIVDHIPG
FKVRCSEDDEIIGMDESQTGEHGYDYVSIRRDLEDGPLYSEKDLSRTPSHYSSEKTAHHT
PAAAGTETSAREGAAAPAPATPEHAAV