Protein Info for mRNA_4566 in Rhodosporidium toruloides IFO0880
Name: 12934
Annotation: KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Threonine dehydratase, catabolic (EC 4.3.1.19)" in subsystem Branched-Chain Amino Acid Biosynthesis or Glycine and Serine Utilization or Threonine anaerobic catabolism gene cluster or Threonine degradation (EC 4.3.1.19)
MetaCyc Pathways
- superpathway of branched chain amino acid biosynthesis (17/17 steps found)
- superpathway of L-isoleucine biosynthesis I (13/13 steps found)
- L-isoleucine biosynthesis I (from threonine) (7/7 steps found)
- L-methionine degradation II (2/3 steps found)
- L-threonine degradation I (4/6 steps found)
- L-threonine degradation V (1/2 steps found)
- superpathway of L-threonine metabolism (11/18 steps found)
- hypoglycin biosynthesis (4/14 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 4.3.1.19
Use Curated BLAST to search for 4.3.1.19
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1235 amino acids)
>mRNA_4566 KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins (Rhodosporidium toruloides IFO0880) MGEFIDYSKRIKSARSTPQHSPPLEDHDEVKSARSARGDDEDEQHLQPPRRPSRRKSRSS SRYRTAEEDEDGEVNGRSGQVEETGAKHFLAASPLDGRNGPQIVDYARHGRPKPSTFTED FEAPPSPSAIPVKDSDDQDDDAADEEEDHRPPPRSASRRRSSVSAAKPPVSPTLQKPKSP PVLPKPSGPRKLVRKKSKAARDFETEMAALNVNGGAAHSQPRNHVSPTSPRSEDGYISPP PQYQERPLSRTRSRSRSRTSAASPSPAPTPSSPPTRAYSQSSSRPYNNDAPSRNEDDDPL SLTPQDRHYLSRILINLQMQKEFSALSQVGTLTRYGNPFLSVATGPNSKPRRAEETKGGL FGLLGGGGEKRDPAFEGYRWDEDDVEDSPICQYLYWRFLYNMPGLRNAKLEYWQENIQPF FDSFAERDLSSTVERGEVTKRRMLSLGFVRVLGTYYSTCYRPLGPSAPARPTISMMRKID LLVPGSMDNMWRIVFPDRRVGYNAWIAVVQEKEERGGTAFRIVSRVVVAPGQPLYHALQS WSAIQSFASSLASLDPQNRLDLPLLPHASSSSPPSRRTIQRYLRLLVITLSAPPPSLEGS PALTSAREKLESFLLGSSSNQKISGRDLAEWVRRGEEEEDKDDKRHVRWVEVGRKVKKLR TTWANYRKALIEGDEIDKSMAQVRRVAQTSSLPAEYRDAEEWATIWVAGIYIFAGSVNGP EILNILKSFHSLIPYGPIKLGLSLVNPTLAIRAIVQLLLGQPAGQLSLFQRIWQIVCNAA NRHQRKLIDKFRKQLGHDSICDALHAHVQEGYVQRQKTKKEALDRDEDIVLTILRERGSQ RDYELVEGWHEDFVESGGDPTHSSGAKSFADLKELLAAYYRYRDREQVLAIALEANTPRL LHASIATFYQTIHNVANASKLSERVGDIQYFLDDMIKCCETGKTTRADFINLARRHHEKV YYFVRELATNNEHLLDPLLDWSRSGLSFIRSGIPPSRSASHDSPSKRAGVDLDALLPSNP KKREKILREVRSQVKWTRFKKAQTDMQLRIDLLQADAGERKQSWEWKLDREALWQDFLAQ LPEEEVVREPEGLETRMGPGGDLEWAWWAGKDVIGAADKVGVVKAHRESAGEAYREVEKE DKPAAGKIGGAMLGRKLSRRSSNVSQVRKDGYHDEDEDEAYEDGDATFANGRRNSAEGEK LAIPAVKIEATRGLLGRYIDRIKDSLAEARKRQIK