Protein Info for mRNA_4569 in Rhodosporidium toruloides IFO0880

Name: 12937
Annotation: HMMPfam-Integral peroxisomal membrane peroxin-PF06398

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 transmembrane" amino acids 88 to 118 (31 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 221 to 241 (21 residues), see Phobius details PF06398: Pex24p" amino acids 49 to 246 (198 residues), 82.7 bits, see alignment E=1.4e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (366 amino acids)

>mRNA_4569 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 (Rhodosporidium toruloides IFO0880)
MSTPAAPAAPDKAPTFPSLRSLGNLDDLLVGAVLKAGSPTTVQGSKEALSLQTTSVNFRR
FVQKAGPIFVAQDAVESVLRWEDPAKTLFFAACWGFLCYWPSLIILLPNVVLVSILLATY
QAKKATGQAPESQEGPTPLAREPPSEGSVDYLANLQNIQIMMGRVADLSDLLRSTVPFLT
WRDERLTRAALHLAIVSSFLLAFAAHFVPWRLVFFVAGESAFFLGHPIVQTFIASLAPYL
SASSKERSKLVRKLLEDDALNDEELEMEVVEVQRIEVETRVPDAPVEAAWQSEAVVGGEL
PSGFRWLGEWEDATPSDGAVDAEGWTYLHLDGTRSTTPFVQGEKGPLWAQSRRRRLTRRA
IKNPLL