Protein Info for mRNA_4608 in Rhodosporidium toruloides IFO0880

Name: 12976
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 526 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 97 to 115 (19 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details amino acids 284 to 307 (24 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 349 to 371 (23 residues), see Phobius details amino acids 382 to 405 (24 residues), see Phobius details amino acids 421 to 443 (23 residues), see Phobius details amino acids 449 to 468 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 11 to 479 (469 residues), 267.9 bits, see alignment E=7.8e-84 PF00083: Sugar_tr" amino acids 15 to 483 (469 residues), 292.1 bits, see alignment E=7.9e-91 PF07690: MFS_1" amino acids 45 to 216 (172 residues), 52.5 bits, see alignment E=3.9e-18

Best Hits

KEGG orthology group: None (inferred from 58% identity to nfi:NFIA_034480)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (526 amino acids)

>mRNA_4608 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MELHGKRLIWAIQSVCALSIFFFGYDQGMMGGVNGAPDYIQTMNLGYLTPSANGGKVGAT
VTDSTKQGGIVAAYYLGTLIGCLVGGWIGDKLGRKKTIWIGALWILVGAPLQAAAQNVAW
MVMARIITGVGTGHLNVIVPVWSAETSGHLSRGFFIALEFTLNIFGVVVAYWLEYGLSFI
GDGNTQIRWRFPIAFQLVPLIGLVFATYFMPESPRWLMKAGRHDEARALLGRLRSEDGEV
NDVALAEYYEIDQTIRMDGGEEPSYMKMFFSPCGKLHLSRRTQLAIWIQILQEWGGIAAI
TVYQPVIFGLAGFDASKAGWVSGVNTITYMFSTLICVFTLDRIGRRMTLFWGGAVQAFAL
IMAGVFVHLLTVHPEKTAQYGGAATFMVFLYTATFGASWLTVPWIYPAEIWPVNARAKGN
AMGVVGWSIGNGWCTLLVPVMFAKIKENALYIFGCANILAIVVVYLFYPETANRTLEEID
FLFMSDSPLVWHAEASHARLKGELDAIVEAKTHTVHKENYSDEKAL