Protein Info for mRNA_4613 in Rhodosporidium toruloides IFO0880

Name: 12981
Annotation: BLAST phospholipid-translocating ATPase [Microbotryum lychn...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 50 to 67 (18 residues), see Phobius details amino acids 70 to 70 (1 residues), see Phobius details amino acids 72 to 72 (1 residues), see Phobius details amino acids 74 to 75 (2 residues), see Phobius details amino acids 84 to 110 (27 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>mRNA_4613 BLAST phospholipid-translocating ATPase [Microbotryum lychn... (Rhodosporidium toruloides IFO0880)
MVLRCVLSALPPAGNVFSRSPISSANLVRLPRNFAPSPSMTRPPVARSRYLRPISTATFL
PLVLYEQFKFFYKFYFSLVALSQFVPALRIGGFLATYIVPLAFVLAFAIGKEAFDDYKRY
LRDRAANAALYSRLVPHSASTPHSHHASSCTPCSAPLKPTPTSNLRVS