Protein Info for mRNA_4660 in Rhodosporidium toruloides IFO0880

Name: 13028
Annotation: Interpro Transcription-silencing protein, cryptic loci regulator Clr2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 813 PF16761: Clr2_transil" amino acids 86 to 157 (72 residues), 38.9 bits, see alignment E=6.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (813 amino acids)

>mRNA_4660 Interpro Transcription-silencing protein, cryptic loci regulator Clr2 (Rhodosporidium toruloides IFO0880)
MPVIPSHDPVPGSYSVKWASVNHKDEPNVLTITPGFGDGSEERWPPQGPDMSLLGPEHEK
QQQWRRTAAEVIAKDLGLLKPTAQHWILSELPTGYGLFQQVTQPKESAPRMTGKDKIRHD
RFIFGHNSKKIRSAISLGKHISNQIFGAKSLCHCDGCKVTQPKASASSMADIGAPIKMQP
RKRKRTGEYANLAGVNTSAPPSMSGLGTAEGSEAGGDFDDATSVGTTETADYTFTGGDSA
PTSPRKRTVSGGGGRGRGRASGPGSENGSMRGRGRGRGRAKRADDDDDYGDDDDGSDYSE
EVGSVGPTAPRSTSARQRRPTSKVLSQIEPNIPTAPGEPAADDYEALMIPAGKDVYRAMG
VPTPEEVKEDLADPQASRVGELVWVRVPLGPPPTGELAHAQLSRWPGIVRGRAPAPENPR
EKVYRVELLGMSSEDTLEGVRSENVTPWLGYIPSNSAYLNANPPEDDGIAAGQPKKRWAA
IQEEGWLAVARAFRQAHRIAKAYAAIQARPLPEIEPGIHFTVPDGSSRFTATSTKDLVET
GEEDEYLTYDYINYGPEIIHLGDWVRLDPSTKLEPIVTGARKKQPSKALPLSLVMRVGGI
YRGKRGAPLIARGLIFEQIETTSMNRSIVDPSMTVLDQATLEFLPPPFPRHKWRFVQPPL
DVVSVDVLFSPSVAGRYYPIPPASPTWTHHTVVNSWLDEAMSGNGPAGKGTGAVGGKGEE
GIRALSLMLAGLTAGDRTVRIDAVNGINGGRDEQYRIAEEQALDRAAFPPPPQPPVPAAQ
PAAEPAALPDATPAAKVEDAAAATTSMDVDAQA