Protein Info for mRNA_4661 in Rhodosporidium toruloides IFO0880

Name: 13029
Annotation: K20180 VPS16 vacuolar protein sorting-associated protein 16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 956 transmembrane" amino acids 97 to 120 (24 residues), see Phobius details PF04841: Vps16_N" amino acids 7 to 172 (166 residues), 49.9 bits, see alignment E=2.3e-17 amino acids 230 to 474 (245 residues), 141.9 bits, see alignment E=2.6e-45 PF04840: Vps16_C" amino acids 611 to 687 (77 residues), 64.2 bits, see alignment E=1.1e-21 amino acids 727 to 939 (213 residues), 182 bits, see alignment E=1.6e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (956 amino acids)

>mRNA_4661 K20180 VPS16 vacuolar protein sorting-associated protein 16 (Rhodosporidium toruloides IFO0880)
MVATSRSASWLPLNDTFYRSHRVYSLAGYPLARVDLSDHVIAAATCGGPVALMRDRSKPV
LLGKYDLAAAGAGTKVSVYSSAGQLLQTITWDSPTPIVHLAFLSPLTLLLLTSSGIYRLY
SISTHPFLPPSYTQHDIPNADDHGGIREAKSWDTGFVALMVSGAFVEVKGFGSGRAIDGG
AEGADGLDGRGKGKGRSDREGGSSGGKATMLASTGLDSLPDCWCVVPPDVSSSRGTEVLL
AKGETVWRLDEIDCVDQRLSRGPYLSITPSPSGRFLALLCASPSSSNPPQVWVTSSEFSR
SFSDVALTSEMSEGEKGRPRLLEWCGSNSVVVAWERTVVMVGPYGETLKFFYTDPVHLVS
EIDGTRILSSESCDFLQIVPQSSQSVHLPGSTSPASLLYEASLEFYDRKSPRADEYIRNG
LLGGGNGGREMREAVEGCLDAAAKEWDEDEQKRLLKAAAFGKSFLEAYNPTDYVQTTKIL
RVLNAVRDYKVGLPLTWDEYHAMPPSHLISRLVALSQHLLALRISSFLGLSPSPVIKHWA
QQLIAASAPGVATVNDGAPLSDEEVSRLIVDKLQSLSSPTPVATSASASASGTASSASST
TGLVPDVPLSSGDIALTAFRLGRPHLAALLIEREPRAGKQVPLLLRMGEGEEAMKKAVKS
GDPELVFQVLLHLRQKLSPGDLFRLVERVSTTTSASASSAAPSPYTPHTRDSDPILFLQL
FLREIGEDKGLLRDFWYQDDRRVEMGCEMLVEAGREQDFGDKVAKVRQAQKSFSEDKERS
FEAKMVDDHIRLLVLQQQLEQDSAASGKTFVGLSVNETIRQCILAGMDKKAEKVRSEFKV
PDKRFWYLKLRSLISLRDWDALDTFARSKKSPIGYEPWVDNLIRAGAHRQAVKYVEKCDV
RNRVELYVKCGEWVMAGQECVRRGESGRLHDLKARSPNNIIAAQLDELLQDMSQTH