Protein Info for mRNA_4674 in Rhodosporidium toruloides IFO0880

Name: 13042
Annotation: K08150 SLC2A13, ITR MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 63 to 90 (28 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details amino acids 137 to 156 (20 residues), see Phobius details amino acids 162 to 187 (26 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 317 to 341 (25 residues), see Phobius details amino acids 353 to 375 (23 residues), see Phobius details amino acids 387 to 406 (20 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details amino acids 464 to 484 (21 residues), see Phobius details amino acids 490 to 512 (23 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 33 to 523 (491 residues), 370.8 bits, see alignment E=5.2e-115 PF00083: Sugar_tr" amino acids 68 to 527 (460 residues), 381.9 bits, see alignment E=4.6e-118 PF07690: MFS_1" amino acids 73 to 448 (376 residues), 82.7 bits, see alignment E=2.6e-27

Best Hits

KEGG orthology group: K08150, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13 (inferred from 56% identity to scm:SCHCODRAFT_77346)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>mRNA_4674 K08150 SLC2A13, ITR MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13 (Rhodosporidium toruloides IFO0880)
MSSTPPAPLLGPDKAPSTRSNSSGELDFDKLNNKATLKHLSQSRLEVDESVVRAEGEERT
TFFVWWLVIAAATGGLLFGYDTGVIGGALVHKDVASDLHRVPLGSFDKELLTSATTLGAL
IAGFSSGVLADIIGRKIVIGLADAIFIIGAVLQAVSYGANAYWIMAVGRLIIGFGVGLAS
LVVPLYIGELSPTSLRGRLVTLNVVAITGGQVIAYCLNLAFQNVTHGWRFMVGLGAIPPA
LQLLMLIYLPESPRFLLRHDKLEATVTILRKIYPYATEEQLHLKADVISKSVKENMGHRA
TFVQTWKRLHLNGPNFRALVVACGLQGIQQLCGFNTLMYYAPTLFQSVGFDNSLVIGLVI
SIVNLVFTIVALFIIDRVGRRRIACSTVPGMCGALILAAVAFHFLTIHTGGKLPDNGAGL
NDKWSPVVLTAMLVYVAFYATGIGNIPWQQGELFEMDVRGMGTALSTTCNWGGNLIIGST
FLSLIDRITAAGAFGFYAGLCFLGSIFVFFLYPETSGLSLEETREVFLTGFGIRKANRMR
KQKMAALAQVRDADDDATV