Protein Info for mRNA_4678 in Rhodosporidium toruloides IFO0880

Name: 13046
Annotation: K11252 H2B histone H2B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 PF00125: Histone" amino acids 7 to 113 (107 residues), 83.7 bits, see alignment E=2.4e-27 PF00808: CBFD_NFYB_HMF" amino acids 54 to 111 (58 residues), 26.1 bits, see alignment E=1.3e-09 PF03847: TFIID_20kDa" amino acids 56 to 109 (54 residues), 20.9 bits, see alignment E=6.2e-08

Best Hits

Swiss-Prot: 76% identical to H2B_AJECA: Histone H2B (HTB1) from Ajellomyces capsulatus

KEGG orthology group: K11252, histone H2B (inferred from 81% identity to lbc:LACBIDRAFT_185040)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (138 amino acids)

>mRNA_4678 K11252 H2B histone H2B (Rhodosporidium toruloides IFO0880)
MAPKSTASKGPASSAGATGGKAPQKTAKKAIKSTDGGEKKKRKRTRKETYSSYIYKVLKQ
VHPDTGISNKAMLILNSFVNDIFERVATEASKLAQYNKKSTISSREIQTAVRLILPGELS
KHAISEGTKAVTKFSSNK